BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.9 nTPM
HPA:12.9 nTPM
GTEx:54.2 nTPM
FANTOM5:68.3 Scaled Tags Per Million
Pig:0.7 nTPM
Mouse:5.0 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.7
2846 Female, age 79, unknown 17.5
1857 Female, age 85, left hemisphere 16.2
1854 Male, age 80, left hemisphere 12.6
2290 Female, age 72, unknown 12.5
1781 Male, age 74, unknown 10.2
2288 Male, age 75, left hemisphere 6.7
2289 Male, age 61, right hemisphere 4.9
2481 Female, age 94, left hemisphere 4.8
Claustrum
nTPM: 4.6
2196 Female, age 79, unknown 6.5
1956 Male, age 74, unknown 5.7
2198 Male, age 80, both hemispheres 5.7
2568 Male, age 61, both hemispheres 5.0
2284 Female, age 91, both hemispheres 4.9
2645 Female, age 72, unknown 4.2
2392 Female, age 94, both hemispheres 3.6
2491 Male, age 75, both hemispheres 3.2
2292 Female, age 85, both hemispheres 2.5
Globus pallidus, externus
nTPM: 1.8
2395 Male, age 75, both hemispheres 2.4
2567 Female, age 72, unknown 2.0
2646 Male, age 61, right hemisphere 1.9
2772 Female, age 79, unknown 1.6
1996 Male, age 80, right hemisphere 1.1
Globus pallidus, internus
nTPM: 1.8
2483 Female, age 94, right hemisphere 2.7
2287 Male, age 75, right hemisphere 2.4
2566 Female, age 72, unknown 2.2
2037 Male, age 80, right hemisphere 1.8
2111 Female, age 85, right hemisphere 1.4
2778 Female, age 91, both hemispheres 1.2
1818 Male, age 74, unknown 1.0
Nucleus accumbens
nTPM: 9.5
1856 Female, age 91, right hemisphere 18.0
1783 Male, age 74, unknown 15.2
1806 Female, age 85, left hemisphere 15.0
2698 Female, age 72, unknown 9.6
2824 Male, age 61, right hemisphere 5.6
2391 Female, age 94, left hemisphere 5.0
2286 Male, age 75, left hemisphere 4.2
2732 Male, age 80, right hemisphere 3.3
Nucleus basalis of Meynert
nTPM: 7.5
2393 Male, age 80, right hemisphere 17.2
2484 Female, age 94, left hemisphere 6.9
2821 Male, age 75, both hemispheres 3.8
2569 Male, age 61, both hemispheres 2.3
Nucleus of the diagonal band
nTPM: 4.5
1812 Female, age 91, both hemispheres 6.2
2195 Female, age 85, both hemispheres 5.2
2775 Male, age 80, right hemisphere 5.2
1979 Male, age 74, unknown 3.0
2029 Male, age 61, right hemisphere 2.8
Olfactory tubercle
nTPM: 5.6
1998 Female, age 91, both hemispheres 7.1
1846 Male, age 80, right hemisphere 5.8
2487 Female, age 94, left hemisphere 4.7
2856 Male, age 75, right hemisphere 4.7
Putamen
nTPM: 12.9
1937 Female, age 91, right hemisphere 20.6
1838 Male, age 80, right hemisphere 18.2
2466 Female, age 79, unknown 14.6
1829 Male, age 74, unknown 12.1
2489 Female, age 72, unknown 10.3
2482 Female, age 94, left hemisphere 9.2
2647 Male, age 75, left hemisphere 5.1
Septal nuclei
nTPM: 4.5
1960 Male, age 74, unknown 7.7
2031 Female, age 72, unknown 6.2
2629 Female, age 94, right hemisphere 5.1
2009 Female, age 91, both hemispheres 4.4
2059 Female, age 85, both hemispheres 3.9
2199 Male, age 80, right hemisphere 2.4
2394 Male, age 61, left hemisphere 2.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 54.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.2
Samples: 246

Max nTPM: 199.1
Min nTPM: 0.7
Std nTPM: 29.5
Median nTPM: 42.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 199.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 136.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 129.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 125.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 115.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 112.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 106.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 106.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 103.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 98.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 98.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.3
Samples: 246

Max nTPM: 114.4
Min nTPM: 1.2
Std nTPM: 15.2
Median nTPM: 16.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 114.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 106.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 81.9
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 69.1
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 60.9
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 56.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 55.5
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 53.4
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 51.4
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 49.3
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 46.5
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Brain - Putamen (basal ganglia)
Average nTPM: 54.2
Samples: 205

Max nTPM: 192.6
Min nTPM: 3.3
Std nTPM: 36.1
Median nTPM: 54.2
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 192.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 175.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 166.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 139.3
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 128.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 123.1
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 122.4
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 115.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 113.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 112.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 110.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 61.7
FF:10164-103B2 76 years, female 61.7
Globus pallidus
Scaled Tags Per Million: 16.8
FF:10175-103C4 60 years, female 27.6
FF:10161-103A8 76 years, female 6.1
Nucleus accumbens
Scaled Tags Per Million: 36.4
FF:10037-101F1 23-56 years, mixed 36.4
Putamen
Scaled Tags Per Million: 68.3
FF:10176-103C5 60 years, female 68.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.7
Pig sample Sample description nTPM
Caudate
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.5
Sample A Female 0.8
Sample B Female 0.9
Sample C Male 0.6
Sample D Male 0.5
Putamen
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.6
Sample C Male 0.5
Sample D Male 0.8
Septum
nTPM: 0.5
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.1
Sample A Female 0.9
Sample B Female 0.7
Sample C Male 0.4
Sample D Male 0.1
Ventral pallidum
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Female 0.8
Sample B Female 0.5
Sample C Male 0.6
Sample D Male 0.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.5
Samples: 4

Max nTPM: 3.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 3.0
Sample D Female 3.1
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 5.4
Min nTPM: 0.4
Sample A Male 5.4
Sample B Male 2.2
Sample C Female 4.0
Sample D Female 0.4
Ventral forebrain
nTPM: 5.1
Samples: 4

Max nTPM: 6.4
Min nTPM: 2.0
Sample A Male 6.4
Sample B Male 2.0
Sample C Female 5.4
Sample D Female 6.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
69568968 Antisense, RP_050426_03_B11, Mouse strain C57BL/6J (56 days, male) 0.3
72472766 Antisense, RP_051101_02_C12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69568968 Antisense, RP_050426_03_B11, Mouse strain C57BL/6J (56 days, male) 0.1
72472766 Antisense, RP_051101_02_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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