MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:67.7 nTPM
HPA:67.7 nTPM
GTEx:73.4 nTPM
FANTOM5:80.4 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.0
2019 Male, age 18, unknown 68.2
2411 Female, age 72, unknown 61.9
2219 Male, age 76, both hemispheres 60.2
1827 Male, age 72, unknown 60.1
1870 Female, age 42, unknown 58.8
1833 Male, age 53, unknown 58.0
2666 Male, age 74, left hemisphere 57.5
2828 Female, age 72, unknown 57.2
1830 Male, age 51, unknown 55.9
2586 Male, age 75, left hemisphere 52.0
Dorsal raphe nucleus
nTPM: 61.4
2298 Female, age 72, unknown 67.2
2750 Male, age 76, both hemispheres 65.1
2047 Male, age 72, unknown 62.4
1828 Male, age 53, unknown 58.0
2016 Female, age 72, unknown 54.1
Inferior colliculus
nTPM: 58.0
2097 Female, age 72, unknown 64.3
1890 Male, age 53, unknown 56.4
2849 Male, age 72, unknown 55.6
1848 Female, age 42, unknown 55.5
Median raphe nucleus
nTPM: 67.7
2220 Male, age 76, midline 67.7
Pedunculopontine tegmental nucleus
nTPM: 61.5
2334 Male, age 80, both hemispheres 64.1
2338 Male, age 61, both hemispheres 60.2
1921 Female, age 85, both hemispheres 60.1
Periaquaductal grey, anterior
nTPM: 58.0
1947 Male, age 18, unknown 59.0
1795 Male, age 51, unknown 58.7
2502 Female, age 75, unknown 56.3
Periaquaductal grey, dorsal
nTPM: 54.8
1840 Male, age 53, unknown 56.5
2850 Male, age 76, both hemispheres 55.9
2464 Female, age 72, unknown 53.9
1831 Male, age 72, unknown 52.7
Periaquaductal grey, lateral
nTPM: 53.9
2272 Male, age 74, both hemispheres 57.6
2140 Male, age 76, both hemispheres 53.0
2053 Male, age 18, unknown 51.1
Pretectal area
nTPM: 62.0
1817 Female, age 42, unknown 73.1
1944 Female, age 72, unknown 69.3
1816 Male, age 51, unknown 68.0
2007 Male, age 72, unknown 67.5
1815 Male, age 53, unknown 64.1
2667 Female, age 75, unknown 61.5
2224 Female, age 72, unknown 61.3
2273 Male, age 74, both hemispheres 56.4
2407 Male, age 75, both hemispheres 54.4
2825 Male, age 18, unknown 53.8
2316 Male, age 76, right hemisphere 53.0
Red nucleus
nTPM: 56.3
2785 Male, age 18, unknown 63.8
1821 Female, age 72, unknown 61.0
1954 Female, age 42, unknown 57.0
2725 Female, age 75, unknown 56.5
1904 Male, age 53, unknown 55.9
2227 Male, age 72, unknown 55.6
1865 Male, age 51, unknown 55.2
2503 Female, age 72, unknown 54.9
2769 Male, age 72, unknown 54.5
2823 Male, age 76, right hemisphere 54.1
2584 Male, age 75, left hemisphere 53.4
2588 Male, age 74, left hemisphere 53.3
Substantia nigra
nTPM: 62.6
1916 Female, age 42, unknown 73.1
1851 Male, age 51, unknown 66.8
1889 Female, age 72, unknown 66.7
2241 Male, age 72, unknown 65.4
1941 Male, age 53, unknown 63.7
2665 Male, age 74, both hemispheres 61.6
2409 Female, age 72, unknown 61.2
2583 Male, age 75, right hemisphere 57.3
2699 Male, age 18, unknown 55.3
2590 Female, age 75, unknown 55.0
Superior colliculus
nTPM: 58.4
2668 Female, age 75, unknown 67.4
2087 Female, age 72, unknown 65.1
1796 Male, age 53, unknown 60.4
2261 Male, age 18, unknown 59.6
1895 Male, age 76, right hemisphere 58.3
1913 Female, age 42, unknown 57.7
2587 Male, age 74, left hemisphere 55.6
1839 Male, age 51, unknown 55.3
1995 Male, age 72, unknown 54.9
2664 Male, age 75, both hemispheres 49.8
Ventral tegmental area
nTPM: 61.6
2410 Female, age 72, unknown 66.1
2218 Male, age 76, both hemispheres 64.9
1915 Female, age 42, unknown 62.6
2223 Female, age 72, unknown 59.3
2021 Male, age 53, unknown 58.4
1942 Male, age 51, unknown 58.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.4
Samples: 139

Max nTPM: 148.6
Min nTPM: 45.1
Std nTPM: 19.9
Median nTPM: 69.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 148.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 142.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 139.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 133.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 133.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 118.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 117.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 115.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 112.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 104.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 103.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.4
FF:10158-103A5 76 years, female 80.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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