BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:63.3 nTPM
HPA:63.3 nTPM
GTEx:76.4 nTPM
FANTOM5:129.3 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA004334
Glial cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 63.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 60.5
2481 Female, age 94, left hemisphere 67.2
2288 Male, age 75, left hemisphere 66.9
2846 Female, age 79, unknown 62.7
2290 Female, age 72, unknown 60.2
1781 Male, age 74, unknown 58.8
1857 Female, age 85, left hemisphere 58.4
1854 Male, age 80, left hemisphere 56.3
2289 Male, age 61, right hemisphere 53.2
Claustrum
nTPM: 59.6
2198 Male, age 80, both hemispheres 64.1
1956 Male, age 74, unknown 61.7
2284 Female, age 91, both hemispheres 60.7
2196 Female, age 79, unknown 60.5
2491 Male, age 75, both hemispheres 59.5
2392 Female, age 94, both hemispheres 59.1
2568 Male, age 61, both hemispheres 58.5
2645 Female, age 72, unknown 56.5
2292 Female, age 85, both hemispheres 56.3
Globus pallidus, externus
nTPM: 56.6
2395 Male, age 75, both hemispheres 63.5
2772 Female, age 79, unknown 63.1
1996 Male, age 80, right hemisphere 59.2
2646 Male, age 61, right hemisphere 51.7
2567 Female, age 72, unknown 45.8
Globus pallidus, internus
nTPM: 59.4
2287 Male, age 75, right hemisphere 70.6
2483 Female, age 94, right hemisphere 67.7
2778 Female, age 91, both hemispheres 60.4
1818 Male, age 74, unknown 59.0
2111 Female, age 85, right hemisphere 54.0
2037 Male, age 80, right hemisphere 53.6
2566 Female, age 72, unknown 50.7
Nucleus accumbens
nTPM: 60.8
1856 Female, age 91, right hemisphere 64.2
2286 Male, age 75, left hemisphere 64.2
1806 Female, age 85, left hemisphere 62.4
2698 Female, age 72, unknown 61.9
2391 Female, age 94, left hemisphere 61.0
1783 Male, age 74, unknown 60.3
2824 Male, age 61, right hemisphere 58.6
2732 Male, age 80, right hemisphere 54.2
Nucleus basalis of Meynert
nTPM: 58.6
2484 Female, age 94, left hemisphere 62.8
2821 Male, age 75, both hemispheres 62.0
2393 Male, age 80, right hemisphere 57.2
2569 Male, age 61, both hemispheres 52.3
Nucleus of the diagonal band
nTPM: 63.3
2775 Male, age 80, right hemisphere 66.9
1812 Female, age 91, both hemispheres 66.2
2195 Female, age 85, both hemispheres 66.2
2029 Male, age 61, right hemisphere 59.4
1979 Male, age 74, unknown 57.9
Olfactory tubercle
nTPM: 61.3
1998 Female, age 91, both hemispheres 65.0
1846 Male, age 80, right hemisphere 63.3
2856 Male, age 75, right hemisphere 58.6
2487 Female, age 94, left hemisphere 58.5
Putamen
nTPM: 59.0
2482 Female, age 94, left hemisphere 66.7
2466 Female, age 79, unknown 63.2
1937 Female, age 91, right hemisphere 60.3
1838 Male, age 80, right hemisphere 58.0
1829 Male, age 74, unknown 57.7
2647 Male, age 75, left hemisphere 54.8
2489 Female, age 72, unknown 52.6
Septal nuclei
nTPM: 60.7
1960 Male, age 74, unknown 68.7
2031 Female, age 72, unknown 65.2
2059 Female, age 85, both hemispheres 61.1
2009 Female, age 91, both hemispheres 61.0
2629 Female, age 94, right hemisphere 59.0
2394 Male, age 61, left hemisphere 55.9
2199 Male, age 80, right hemisphere 54.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 76.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 69.6
Samples: 246

Max nTPM: 114.3
Min nTPM: 45.6
Std nTPM: 11.7
Median nTPM: 68.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 114.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 105.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 103.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 99.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 98.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 97.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 97.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 96.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 94.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 94.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 94.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 75.6
Samples: 246

Max nTPM: 117.0
Min nTPM: 29.5
Std nTPM: 16.0
Median nTPM: 77.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 117.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 116.7
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 113.5
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 107.1
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 106.8
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 105.4
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 104.7
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 104.3
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 104.1
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 103.5
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 103.1
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Brain - Putamen (basal ganglia)
Average nTPM: 76.4
Samples: 205

Max nTPM: 136.4
Min nTPM: 49.7
Std nTPM: 12.3
Median nTPM: 75.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 136.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 112.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 104.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 103.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 102.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 101.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 101.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 100.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 99.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 99.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 98.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 98.8
FF:10164-103B2 76 years, female 98.8
Globus pallidus
Scaled Tags Per Million: 97.1
FF:10175-103C4 60 years, female 118.4
FF:10161-103A8 76 years, female 75.8
Nucleus accumbens
Scaled Tags Per Million: 125.7
FF:10037-101F1 23-56 years, mixed 125.7
Putamen
Scaled Tags Per Million: 129.3
FF:10176-103C5 60 years, female 129.3

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The Human Protein Atlas

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