BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:56.9 nTPM
HPA:56.9 nTPM
GTEx:49.1 nTPM
FANTOM5:17.1 Scaled Tags Per Million
Mouse:45.6 nTPM
Allen mouse:1.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA040873
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.2
2481 Female, age 94, left hemisphere 55.7
2290 Female, age 72, unknown 55.6
1781 Male, age 74, unknown 54.9
2288 Male, age 75, left hemisphere 54.6
2846 Female, age 79, unknown 54.3
1854 Male, age 80, left hemisphere 54.1
1857 Female, age 85, left hemisphere 53.6
2289 Male, age 61, right hemisphere 50.9
Claustrum
nTPM: 55.3
2198 Male, age 80, both hemispheres 58.3
2568 Male, age 61, both hemispheres 55.7
2645 Female, age 72, unknown 55.7
1956 Male, age 74, unknown 55.5
2292 Female, age 85, both hemispheres 55.1
2491 Male, age 75, both hemispheres 54.9
2392 Female, age 94, both hemispheres 54.8
2196 Female, age 79, unknown 54.7
2284 Female, age 91, both hemispheres 53.5
Globus pallidus, externus
nTPM: 55.6
2772 Female, age 79, unknown 60.6
2395 Male, age 75, both hemispheres 58.1
1996 Male, age 80, right hemisphere 57.8
2646 Male, age 61, right hemisphere 51.6
2567 Female, age 72, unknown 50.1
Globus pallidus, internus
nTPM: 55.6
2287 Male, age 75, right hemisphere 58.1
2483 Female, age 94, right hemisphere 57.1
2778 Female, age 91, both hemispheres 56.3
1818 Male, age 74, unknown 56.2
2037 Male, age 80, right hemisphere 55.5
2111 Female, age 85, right hemisphere 53.0
2566 Female, age 72, unknown 52.7
Nucleus accumbens
nTPM: 54.6
2286 Male, age 75, left hemisphere 56.4
1856 Female, age 91, right hemisphere 56.3
1783 Male, age 74, unknown 54.7
1806 Female, age 85, left hemisphere 54.2
2698 Female, age 72, unknown 54.1
2732 Male, age 80, right hemisphere 53.9
2824 Male, age 61, right hemisphere 53.9
2391 Female, age 94, left hemisphere 53.1
Nucleus basalis of Meynert
nTPM: 53.3
2821 Male, age 75, both hemispheres 55.0
2393 Male, age 80, right hemisphere 52.9
2569 Male, age 61, both hemispheres 52.6
2484 Female, age 94, left hemisphere 52.5
Nucleus of the diagonal band
nTPM: 56.9
1812 Female, age 91, both hemispheres 59.5
2775 Male, age 80, right hemisphere 58.8
2029 Male, age 61, right hemisphere 56.5
2195 Female, age 85, both hemispheres 55.2
1979 Male, age 74, unknown 54.4
Olfactory tubercle
nTPM: 55.9
1998 Female, age 91, both hemispheres 58.8
1846 Male, age 80, right hemisphere 58.3
2487 Female, age 94, left hemisphere 54.1
2856 Male, age 75, right hemisphere 52.2
Putamen
nTPM: 52.8
2466 Female, age 79, unknown 55.0
2482 Female, age 94, left hemisphere 54.9
1937 Female, age 91, right hemisphere 54.6
2647 Male, age 75, left hemisphere 53.3
1838 Male, age 80, right hemisphere 53.1
1829 Male, age 74, unknown 49.8
2489 Female, age 72, unknown 49.1
Septal nuclei
nTPM: 56.7
2031 Female, age 72, unknown 62.1
1960 Male, age 74, unknown 58.4
2009 Female, age 91, both hemispheres 57.0
2059 Female, age 85, both hemispheres 56.1
2394 Male, age 61, left hemisphere 54.8
2629 Female, age 94, right hemisphere 54.7
2199 Male, age 80, right hemisphere 53.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.2
Samples: 246

Max nTPM: 74.1
Min nTPM: 24.6
Std nTPM: 8.0
Median nTPM: 43.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 74.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 69.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 68.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 66.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 66.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 65.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 64.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 64.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 62.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 62.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 61.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.1
Samples: 246

Max nTPM: 77.7
Min nTPM: 30.3
Std nTPM: 8.5
Median nTPM: 47.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 77.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 71.4
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 71.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 70.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 70.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 69.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 69.9
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 67.9
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 67.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 66.6
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 66.5
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Brain - Putamen (basal ganglia)
Average nTPM: 48.1
Samples: 205

Max nTPM: 72.6
Min nTPM: 33.3
Std nTPM: 7.7
Median nTPM: 47.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 72.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 70.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 69.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 68.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 68.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 65.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 64.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 63.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 62.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 61.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 61.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 17.1
FF:10164-103B2 76 years, female 17.1
Globus pallidus
Scaled Tags Per Million: 14.8
FF:10175-103C4 60 years, female 17.3
FF:10161-103A8 76 years, female 12.2
Nucleus accumbens
Scaled Tags Per Million: 17.0
FF:10037-101F1 23-56 years, mixed 17.0
Putamen
Scaled Tags Per Million: 17.0
FF:10176-103C5 60 years, female 17.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 45.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 36.7
Samples: 4

Max nTPM: 38.2
Min nTPM: 33.9
Sample A Male 38.0
Sample B Male 38.2
Sample C Female 33.9
Sample D Female 36.6
Septum
nTPM: 45.6
Samples: 4

Max nTPM: 47.6
Min nTPM: 42.4
Sample A Male 47.6
Sample B Male 46.6
Sample C Female 45.7
Sample D Female 42.4
Ventral forebrain
nTPM: 45.4
Samples: 4

Max nTPM: 51.1
Min nTPM: 40.1
Sample A Male 45.8
Sample B Male 44.6
Sample C Female 51.1
Sample D Female 40.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
686209 Antisense, RP_040916_01_B05, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 1.1
686209 Antisense, RP_040916_01_B05, Mouse strain C57BL/6J (56 days, male) 1.1

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