BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.2 nTPM
HPA:37.2 nTPM
GTEx:35.6 nTPM
FANTOM5:1.9 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA053611
Glial cells Medium
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.1
2289 Male, age 61, right hemisphere 32.0
2288 Male, age 75, left hemisphere 19.2
1854 Male, age 80, left hemisphere 15.3
2290 Female, age 72, unknown 4.6
2846 Female, age 79, unknown 2.0
1781 Male, age 74, unknown 0.0
1857 Female, age 85, left hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 37.2
2645 Female, age 72, unknown 99.6
2292 Female, age 85, both hemispheres 77.3
2568 Male, age 61, both hemispheres 53.1
2284 Female, age 91, both hemispheres 41.8
2392 Female, age 94, both hemispheres 31.0
1956 Male, age 74, unknown 22.4
2198 Male, age 80, both hemispheres 5.7
2196 Female, age 79, unknown 3.7
2491 Male, age 75, both hemispheres 0.0
Globus pallidus, externus
nTPM: 8.1
2646 Male, age 61, right hemisphere 22.5
2567 Female, age 72, unknown 14.1
2395 Male, age 75, both hemispheres 3.9
1996 Male, age 80, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 9.2
2111 Female, age 85, right hemisphere 48.8
2566 Female, age 72, unknown 15.1
2778 Female, age 91, both hemispheres 0.6
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
Nucleus accumbens
nTPM: 3.6
2824 Male, age 61, right hemisphere 16.6
2732 Male, age 80, right hemisphere 12.1
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
Nucleus basalis of Meynert
nTPM: 19.2
2393 Male, age 80, right hemisphere 40.7
2569 Male, age 61, both hemispheres 19.3
2484 Female, age 94, left hemisphere 16.7
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 11.2
2195 Female, age 85, both hemispheres 36.5
2029 Male, age 61, right hemisphere 12.5
2775 Male, age 80, right hemisphere 7.0
1812 Female, age 91, both hemispheres 0.0
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 9.3
2856 Male, age 75, right hemisphere 18.7
1998 Female, age 91, both hemispheres 8.7
2487 Female, age 94, left hemisphere 6.5
1846 Male, age 80, right hemisphere 3.2
Putamen
nTPM: 20.3
2489 Female, age 72, unknown 64.3
1838 Male, age 80, right hemisphere 35.4
2647 Male, age 75, left hemisphere 26.9
1829 Male, age 74, unknown 9.5
2466 Female, age 79, unknown 6.3
1937 Female, age 91, right hemisphere 0.0
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 4.2
2394 Male, age 61, left hemisphere 16.2
2199 Male, age 80, right hemisphere 10.6
2059 Female, age 85, both hemispheres 2.7
1960 Male, age 74, unknown 0.0
2009 Female, age 91, both hemispheres 0.0
2031 Female, age 72, unknown 0.0
2629 Female, age 94, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 35.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.6
Samples: 246

Max nTPM: 114.3
Min nTPM: 0.0
Std nTPM: 14.5
Median nTPM: 34.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 114.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 70.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 66.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 65.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 64.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 64.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 64.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 63.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 63.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 61.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 61.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.5
Samples: 246

Max nTPM: 107.6
Min nTPM: 2.2
Std nTPM: 13.6
Median nTPM: 29.0
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 107.6
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 72.6
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 71.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 66.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 66.1
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 65.8
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 60.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 57.6
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 55.9
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 55.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 55.6
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Brain - Putamen (basal ganglia)
Average nTPM: 33.3
Samples: 205

Max nTPM: 84.6
Min nTPM: 1.0
Std nTPM: 14.7
Median nTPM: 31.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 84.6
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 75.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 74.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 71.6
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 69.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 68.2
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 64.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 62.3
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 61.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 60.7
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 59.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.2
FF:10164-103B2 76 years, female 1.2
Globus pallidus
Scaled Tags Per Million: 1.9
FF:10175-103C4 60 years, female 2.3
FF:10161-103A8 76 years, female 1.6
Nucleus accumbens
Scaled Tags Per Million: 1.1
FF:10037-101F1 23-56 years, mixed 1.1
Putamen
Scaled Tags Per Million: 1.0
FF:10176-103C5 60 years, female 1.0

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The Human Protein Atlas

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