BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:0.6 nTPM
HPA:0.6 nTPM
GTEx:0.3 nTPM
FANTOM5:3.5 Scaled Tags Per Million
Pig:2.0 nTPM
Mouse:1.6 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041276
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.2
2846 Female, age 79, unknown 0.6
2288 Male, age 75, left hemisphere 0.5
1854 Male, age 80, left hemisphere 0.4
2290 Female, age 72, unknown 0.4
1857 Female, age 85, left hemisphere 0.2
1781 Male, age 74, unknown 0.0
2289 Male, age 61, right hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 0.0
1956 Male, age 74, unknown 0.0
2196 Female, age 79, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2284 Female, age 91, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2491 Male, age 75, both hemispheres 0.0
2568 Male, age 61, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.0
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.3
2393 Male, age 80, right hemisphere 1.0
2484 Female, age 94, left hemisphere 0.3
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 0.3
2029 Male, age 61, right hemisphere 0.9
2775 Male, age 80, right hemisphere 0.6
1812 Female, age 91, both hemispheres 0.0
1979 Male, age 74, unknown 0.0
2195 Female, age 85, both hemispheres 0.0
Olfactory tubercle
nTPM: 0.6
2487 Female, age 94, left hemisphere 1.1
1998 Female, age 91, both hemispheres 0.6
2856 Male, age 75, right hemisphere 0.6
1846 Male, age 80, right hemisphere 0.2
Putamen
nTPM: 0.1
1838 Male, age 80, right hemisphere 0.6
1829 Male, age 74, unknown 0.3
2466 Female, age 79, unknown 0.3
1937 Female, age 91, right hemisphere 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 0.1
2629 Female, age 94, right hemisphere 0.7
2031 Female, age 72, unknown 0.3
1960 Male, age 74, unknown 0.0
2009 Female, age 91, both hemispheres 0.0
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.3
Samples: 246

Max nTPM: 0.9
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 0.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 0.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 0.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 0.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 0.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 0.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 0.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 0.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 0.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 0.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 0.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.2
Samples: 246

Max nTPM: 0.8
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.2
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 0.8
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 0.6
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 0.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 0.6
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 0.6
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 0.5
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 0.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 0.5
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 0.5
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 0.5
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 0.4
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Brain - Putamen (basal ganglia)
Average nTPM: 0.3
Samples: 205

Max nTPM: 0.7
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 0.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 0.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 0.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 0.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 0.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 0.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 0.5
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 0.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 0.5
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 0.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 0.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.0
FF:10164-103B2 76 years, female 1.0
Globus pallidus
Scaled Tags Per Million: 3.5
FF:10161-103A8 76 years, female 5.6
FF:10175-103C4 60 years, female 1.5
Nucleus accumbens
Scaled Tags Per Million: 2.2
FF:10037-101F1 23-56 years, mixed 2.2
Putamen
Scaled Tags Per Million: 2.9
FF:10176-103C5 60 years, female 2.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.0
Pig sample Sample description nTPM
Caudate
nTPM: 1.7
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.3
Sample A Female 2.2
Sample B Female 1.3
Sample C Male 1.3
Sample D Male 2.0
Putamen
nTPM: 2.0
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 2.2
Sample C Male 1.7
Sample D Male 2.5
Septum
nTPM: 0.8
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.6
Sample A Female 1.0
Sample B Female 0.6
Sample C Male 0.8
Sample D Male 0.9
Ventral pallidum
nTPM: 1.8
Samples: 4

Max nTPM: 2.9
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 2.9
Sample C Male 1.9
Sample D Male 1.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.3
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.1
Sample A Male 1.1
Sample B Male 1.1
Sample C Female 1.4
Sample D Female 1.7
Septum
nTPM: 0.8
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.6
Sample A Male 1.0
Sample B Male 0.8
Sample C Female 0.7
Sample D Female 0.6
Ventral forebrain
nTPM: 1.6
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.4
Sample A Male 1.4
Sample B Male 1.6
Sample C Female 1.5
Sample D Female 1.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
74581400 Antisense, RP_060220_04_G02, Mouse strain C57BL/6J (56 days, male) 0.2
70203676 Antisense, RP_050519_02_B01, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.0
70203676 Antisense, RP_050519_02_B01, Mouse strain C57BL/6J (56 days, male) 0.1
74581400 Antisense, RP_060220_04_G02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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