MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.9 nTPM
HPA:15.9 nTPM
GTEx:11.2 nTPM
FANTOM5:14.2 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:38.4 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.6
1870 Female, age 42, unknown 12.0
1827 Male, age 72, unknown 11.8
1833 Male, age 53, unknown 11.7
2586 Male, age 75, left hemisphere 11.5
2828 Female, age 72, unknown 11.4
1830 Male, age 51, unknown 11.2
2219 Male, age 76, both hemispheres 9.9
2411 Female, age 72, unknown 9.8
2666 Male, age 74, left hemisphere 8.3
2019 Male, age 18, unknown 8.2
Dorsal raphe nucleus
nTPM: 14.3
2047 Male, age 72, unknown 20.3
2016 Female, age 72, unknown 13.7
2298 Female, age 72, unknown 13.3
1828 Male, age 53, unknown 12.9
2750 Male, age 76, both hemispheres 11.2
Inferior colliculus
nTPM: 11.9
1848 Female, age 42, unknown 13.2
2849 Male, age 72, unknown 12.2
2097 Female, age 72, unknown 11.4
1890 Male, age 53, unknown 10.8
Median raphe nucleus
nTPM: 15.9
2220 Male, age 76, midline 15.9
Pedunculopontine tegmental nucleus
nTPM: 10.4
2334 Male, age 80, both hemispheres 11.6
1921 Female, age 85, both hemispheres 9.8
2338 Male, age 61, both hemispheres 9.7
Periaquaductal grey, anterior
nTPM: 12.3
1947 Male, age 18, unknown 13.9
2502 Female, age 75, unknown 11.5
1795 Male, age 51, unknown 11.4
Periaquaductal grey, dorsal
nTPM: 11.9
1840 Male, age 53, unknown 13.6
2850 Male, age 76, both hemispheres 12.5
2464 Female, age 72, unknown 11.3
1831 Male, age 72, unknown 10.3
Periaquaductal grey, lateral
nTPM: 11.3
2140 Male, age 76, both hemispheres 12.3
2053 Male, age 18, unknown 11.4
2272 Male, age 74, both hemispheres 10.3
Pretectal area
nTPM: 10.9
2825 Male, age 18, unknown 13.3
2273 Male, age 74, both hemispheres 13.0
2667 Female, age 75, unknown 12.0
2224 Female, age 72, unknown 11.8
1816 Male, age 51, unknown 10.5
1944 Female, age 72, unknown 10.5
2407 Male, age 75, both hemispheres 10.4
2316 Male, age 76, right hemisphere 10.3
1815 Male, age 53, unknown 10.0
2007 Male, age 72, unknown 9.1
1817 Female, age 42, unknown 9.0
Red nucleus
nTPM: 9.1
2588 Male, age 74, left hemisphere 9.7
1821 Female, age 72, unknown 9.6
2584 Male, age 75, left hemisphere 9.6
1954 Female, age 42, unknown 9.5
2503 Female, age 72, unknown 9.4
2769 Male, age 72, unknown 9.4
2823 Male, age 76, right hemisphere 9.4
2725 Female, age 75, unknown 8.9
1865 Male, age 51, unknown 8.8
1904 Male, age 53, unknown 8.6
2227 Male, age 72, unknown 8.6
2785 Male, age 18, unknown 8.2
Substantia nigra
nTPM: 11.4
2409 Female, age 72, unknown 12.8
2590 Female, age 75, unknown 12.7
2665 Male, age 74, both hemispheres 12.2
1851 Male, age 51, unknown 11.6
2699 Male, age 18, unknown 11.5
2241 Male, age 72, unknown 11.2
1916 Female, age 42, unknown 11.0
2583 Male, age 75, right hemisphere 10.9
1941 Male, age 53, unknown 10.2
1889 Female, age 72, unknown 9.8
Superior colliculus
nTPM: 11.1
2664 Male, age 75, both hemispheres 14.5
1796 Male, age 53, unknown 11.9
1839 Male, age 51, unknown 11.6
2587 Male, age 74, left hemisphere 11.3
2261 Male, age 18, unknown 11.2
1913 Female, age 42, unknown 10.8
1895 Male, age 76, right hemisphere 10.5
2087 Female, age 72, unknown 10.0
1995 Male, age 72, unknown 9.7
2668 Female, age 75, unknown 9.7
Ventral tegmental area
nTPM: 11.8
2021 Male, age 53, unknown 13.0
2223 Female, age 72, unknown 11.9
1942 Male, age 51, unknown 11.8
1915 Female, age 42, unknown 11.5
2218 Male, age 76, both hemispheres 11.5
2410 Female, age 72, unknown 11.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.2
Samples: 139

Max nTPM: 32.6
Min nTPM: 3.9
Std nTPM: 4.0
Median nTPM: 10.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 32.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 24.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 22.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 22.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 21.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 20.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 20.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 19.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 19.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 18.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 17.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.2
FF:10158-103A5 76 years, female 14.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.5
Pig sample Sample description nTPM
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 25.6
Min nTPM: 11.4
Sample A Female 11.4
Sample B Female 11.6
Sample C Male 25.6
Sample D Male 17.6
Periaqueductal gray
nTPM: 13.9
Samples: 3

Max nTPM: 17.6
Min nTPM: 12.0
Sample B Female 12.1
Sample C Male 17.6
Sample D Male 12.0
Substantia nigra
nTPM: 12.8
Samples: 4

Max nTPM: 14.9
Min nTPM: 10.4
Sample A Female 13.2
Sample B Female 12.6
Sample C Male 14.9
Sample D Male 10.4
Superior colliculi
nTPM: 15.2
Samples: 4

Max nTPM: 20.6
Min nTPM: 9.0
Sample A Female 15.3
Sample B Female 9.0
Sample C Male 20.6
Sample D Male 16.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.4
Samples: 4

Max nTPM: 41.0
Min nTPM: 35.7
Sample A Male 35.7
Sample B Male 37.6
Sample C Female 41.0
Sample D Female 39.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
70528390 Antisense, RP_050623_02_E03, Mouse strain C57BL/6J (56 days, male) 2.2
77340478 Antisense, RP_070116_02_D02, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.