BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:0.8 nTPM
HPA:0.8 nTPM
GTEx:4.1 nTPM
FANTOM5:0.0 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA042438
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.6
1854 Male, age 80, left hemisphere 1.1
1857 Female, age 85, left hemisphere 1.0
2289 Male, age 61, right hemisphere 1.0
2290 Female, age 72, unknown 0.6
2846 Female, age 79, unknown 0.5
2288 Male, age 75, left hemisphere 0.4
1781 Male, age 74, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 0.7
2196 Female, age 79, unknown 1.1
1956 Male, age 74, unknown 1.0
2645 Female, age 72, unknown 1.0
2284 Female, age 91, both hemispheres 0.9
2568 Male, age 61, both hemispheres 0.8
2292 Female, age 85, both hemispheres 0.6
2392 Female, age 94, both hemispheres 0.6
2491 Male, age 75, both hemispheres 0.6
2198 Male, age 80, both hemispheres 0.1
Globus pallidus, externus
nTPM: 0.2
2567 Female, age 72, unknown 0.5
2395 Male, age 75, both hemispheres 0.4
2646 Male, age 61, right hemisphere 0.2
1996 Male, age 80, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.4
2778 Female, age 91, both hemispheres 0.9
2287 Male, age 75, right hemisphere 0.6
1818 Male, age 74, unknown 0.5
2037 Male, age 80, right hemisphere 0.5
2566 Female, age 72, unknown 0.3
2483 Female, age 94, right hemisphere 0.2
2111 Female, age 85, right hemisphere 0.0
Nucleus accumbens
nTPM: 0.8
2824 Male, age 61, right hemisphere 1.2
1856 Female, age 91, right hemisphere 0.9
1806 Female, age 85, left hemisphere 0.8
2732 Male, age 80, right hemisphere 0.8
1783 Male, age 74, unknown 0.7
2286 Male, age 75, left hemisphere 0.7
2391 Female, age 94, left hemisphere 0.7
2698 Female, age 72, unknown 0.2
Nucleus basalis of Meynert
nTPM: 0.4
2821 Male, age 75, both hemispheres 1.0
2393 Male, age 80, right hemisphere 0.8
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 0.7
1979 Male, age 74, unknown 1.2
2195 Female, age 85, both hemispheres 1.0
2775 Male, age 80, right hemisphere 0.9
2029 Male, age 61, right hemisphere 0.6
1812 Female, age 91, both hemispheres 0.0
Olfactory tubercle
nTPM: 0.8
2487 Female, age 94, left hemisphere 1.1
2856 Male, age 75, right hemisphere 1.0
1998 Female, age 91, both hemispheres 0.9
1846 Male, age 80, right hemisphere 0.3
Putamen
nTPM: 0.7
1937 Female, age 91, right hemisphere 1.6
2466 Female, age 79, unknown 0.7
2647 Male, age 75, left hemisphere 0.7
1829 Male, age 74, unknown 0.6
1838 Male, age 80, right hemisphere 0.6
2489 Female, age 72, unknown 0.6
2482 Female, age 94, left hemisphere 0.1
Septal nuclei
nTPM: 0.8
2059 Female, age 85, both hemispheres 1.2
2394 Male, age 61, left hemisphere 0.9
1960 Male, age 74, unknown 0.7
2629 Female, age 94, right hemisphere 0.7
2031 Female, age 72, unknown 0.6
2199 Male, age 80, right hemisphere 0.6
2009 Female, age 91, both hemispheres 0.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.3
Samples: 246

Max nTPM: 12.0
Min nTPM: 0.0
Std nTPM: 2.3
Median nTPM: 3.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 12.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 10.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 9.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 9.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 9.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 9.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 9.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 9.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 8.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 8.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 8.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.3
Samples: 246

Max nTPM: 10.9
Min nTPM: 0.0
Std nTPM: 2.1
Median nTPM: 1.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 10.9
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 10.6
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 9.8
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 8.9
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 8.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 8.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 7.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 7.5
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 7.0
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 6.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 6.8
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Brain - Putamen (basal ganglia)
Average nTPM: 4.1
Samples: 205

Max nTPM: 14.9
Min nTPM: 0.0
Std nTPM: 2.6
Median nTPM: 3.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 14.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 13.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 11.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 10.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 10.3
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 10.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 10.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 10.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 9.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 9.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 9.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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