BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1.4 nTPM
HPA:1.4 nTPM
GTEx:2.6 nTPM
FANTOM5:71.1 Scaled Tags Per Million
Mouse:2.3 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.3
1781 Male, age 74, unknown 1.6
1854 Male, age 80, left hemisphere 1.5
2846 Female, age 79, unknown 1.4
2289 Male, age 61, right hemisphere 1.3
2290 Female, age 72, unknown 1.3
2288 Male, age 75, left hemisphere 1.2
2481 Female, age 94, left hemisphere 1.0
1857 Female, age 85, left hemisphere 0.9
Claustrum
nTPM: 1.2
2198 Male, age 80, both hemispheres 1.3
2292 Female, age 85, both hemispheres 1.3
1956 Male, age 74, unknown 1.2
2284 Female, age 91, both hemispheres 1.2
2491 Male, age 75, both hemispheres 1.2
2568 Male, age 61, both hemispheres 1.2
2645 Female, age 72, unknown 1.2
2196 Female, age 79, unknown 1.1
2392 Female, age 94, both hemispheres 1.1
Globus pallidus, externus
nTPM: 1.4
2395 Male, age 75, both hemispheres 1.6
2772 Female, age 79, unknown 1.5
2567 Female, age 72, unknown 1.3
2646 Male, age 61, right hemisphere 1.3
1996 Male, age 80, right hemisphere 1.1
Globus pallidus, internus
nTPM: 1.3
1818 Male, age 74, unknown 1.3
2037 Male, age 80, right hemisphere 1.3
2111 Female, age 85, right hemisphere 1.3
2483 Female, age 94, right hemisphere 1.3
2778 Female, age 91, both hemispheres 1.3
2287 Male, age 75, right hemisphere 1.2
2566 Female, age 72, unknown 1.2
Nucleus accumbens
nTPM: 1.3
1856 Female, age 91, right hemisphere 1.8
2391 Female, age 94, left hemisphere 1.6
2698 Female, age 72, unknown 1.3
2732 Male, age 80, right hemisphere 1.3
1783 Male, age 74, unknown 1.2
1806 Female, age 85, left hemisphere 1.1
2286 Male, age 75, left hemisphere 1.1
2824 Male, age 61, right hemisphere 1.1
Nucleus basalis of Meynert
nTPM: 1.4
2821 Male, age 75, both hemispheres 1.6
2484 Female, age 94, left hemisphere 1.4
2393 Male, age 80, right hemisphere 1.3
2569 Male, age 61, both hemispheres 1.1
Nucleus of the diagonal band
nTPM: 1.2
2029 Male, age 61, right hemisphere 1.5
2195 Female, age 85, both hemispheres 1.3
1812 Female, age 91, both hemispheres 1.1
2775 Male, age 80, right hemisphere 1.1
1979 Male, age 74, unknown 1.0
Olfactory tubercle
nTPM: 1.2
1998 Female, age 91, both hemispheres 1.4
1846 Male, age 80, right hemisphere 1.2
2487 Female, age 94, left hemisphere 1.0
2856 Male, age 75, right hemisphere 1.0
Putamen
nTPM: 1.3
1937 Female, age 91, right hemisphere 1.5
2489 Female, age 72, unknown 1.5
2466 Female, age 79, unknown 1.4
2482 Female, age 94, left hemisphere 1.4
1829 Male, age 74, unknown 1.3
2647 Male, age 75, left hemisphere 1.3
1838 Male, age 80, right hemisphere 0.9
Septal nuclei
nTPM: 1.3
2394 Male, age 61, left hemisphere 1.5
1960 Male, age 74, unknown 1.4
2059 Female, age 85, both hemispheres 1.4
2031 Female, age 72, unknown 1.2
2199 Male, age 80, right hemisphere 1.2
2009 Female, age 91, both hemispheres 1.1
2629 Female, age 94, right hemisphere 1.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.9
Samples: 246

Max nTPM: 7.5
Min nTPM: 0.0
Std nTPM: 1.1
Median nTPM: 1.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 7.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 7.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 6.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 6.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 4.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 4.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 4.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 4.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 4.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 4.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 4.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.6
Samples: 246

Max nTPM: 8.0
Min nTPM: 0.0
Std nTPM: 1.4
Median nTPM: 2.4
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 8.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 7.2
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 6.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 6.6
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 6.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 6.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 6.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 5.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 5.9
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 5.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 5.7
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Brain - Putamen (basal ganglia)
Average nTPM: 2.0
Samples: 205

Max nTPM: 6.5
Min nTPM: 0.0
Std nTPM: 1.1
Median nTPM: 1.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 6.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 5.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 5.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 5.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 5.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 4.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 4.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 4.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 4.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 4.3
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 4.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 51.8
FF:10164-103B2 76 years, female 51.8
Globus pallidus
Scaled Tags Per Million: 69.3
FF:10175-103C4 60 years, female 84.4
FF:10161-103A8 76 years, female 54.2
Nucleus accumbens
Scaled Tags Per Million: 71.1
FF:10037-101F1 23-56 years, mixed 71.1
Putamen
Scaled Tags Per Million: 51.4
FF:10176-103C5 60 years, female 51.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.8
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.5
Sample A Male 2.0
Sample B Male 2.1
Sample C Female 1.7
Sample D Female 1.5
Septum
nTPM: 2.3
Samples: 4

Max nTPM: 2.4
Min nTPM: 2.2
Sample A Male 2.3
Sample B Male 2.4
Sample C Female 2.2
Sample D Female 2.4
Ventral forebrain
nTPM: 2.2
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.7
Sample A Male 2.7
Sample B Male 1.7
Sample C Female 1.9
Sample D Female 2.3

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The Human Protein Atlas

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