BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:0.7 nTPM
HPA:0.7 nTPM
GTEx:0.3 nTPM
FANTOM5:0.6 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA008890Antibody HPA045034
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.0
1781 Male, age 74, unknown 0.0
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 0.0
2284 Female, age 91, both hemispheres 0.1
2568 Male, age 61, both hemispheres 0.1
2645 Female, age 72, unknown 0.1
1956 Male, age 74, unknown 0.0
2196 Female, age 79, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2491 Male, age 75, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.1
2567 Female, age 72, unknown 0.4
2395 Male, age 75, both hemispheres 0.1
1996 Male, age 80, right hemisphere 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.1
2037 Male, age 80, right hemisphere 0.4
2566 Female, age 72, unknown 0.3
1818 Male, age 74, unknown 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.1
2824 Male, age 61, right hemisphere 0.4
2286 Male, age 75, left hemisphere 0.2
1806 Female, age 85, left hemisphere 0.1
2732 Male, age 80, right hemisphere 0.1
1783 Male, age 74, unknown 0.0
1856 Female, age 91, right hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
Nucleus basalis of Meynert
nTPM: 0.1
2821 Male, age 75, both hemispheres 0.3
2393 Male, age 80, right hemisphere 0.1
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 0.3
2029 Male, age 61, right hemisphere 1.1
1812 Female, age 91, both hemispheres 0.2
2195 Female, age 85, both hemispheres 0.2
2775 Male, age 80, right hemisphere 0.2
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 0.7
2487 Female, age 94, left hemisphere 1.2
2856 Male, age 75, right hemisphere 0.9
1846 Male, age 80, right hemisphere 0.4
1998 Female, age 91, both hemispheres 0.4
Putamen
nTPM: 0.1
1829 Male, age 74, unknown 0.3
1838 Male, age 80, right hemisphere 0.3
2489 Female, age 72, unknown 0.1
2647 Male, age 75, left hemisphere 0.1
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 0.2
2629 Female, age 94, right hemisphere 0.5
2059 Female, age 85, both hemispheres 0.4
1960 Male, age 74, unknown 0.3
2031 Female, age 72, unknown 0.2
2009 Female, age 91, both hemispheres 0.1
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.3
Samples: 246

Max nTPM: 1.2
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 0.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 0.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 0.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 0.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 0.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 0.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.2
Samples: 246

Max nTPM: 1.5
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 1.5
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 0.9
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 0.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 0.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 0.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 0.7
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 0.7
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 0.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 0.7
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 0.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 0.7
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 0.3
Samples: 205

Max nTPM: 1.9
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 1.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 1.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 0.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 0.9
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 0.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 0.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 0.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 0.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 0.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 0.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.6
FF:10164-103B2 76 years, female 0.6
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10161-103A8 76 years, female 0.1
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.2
FF:10037-101F1 23-56 years, mixed 0.2
Putamen
Scaled Tags Per Million: 0.2
FF:10176-103C5 60 years, female 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.