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CHCHD10
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:181.6 nTPM
HPA:181.6 nTPM
GTEx:237.6 nTPM
FANTOM5:266.9 Scaled Tags Per Million
Pig:89.9 nTPM
Mouse:109.2 nTPM
Allen mouse:6.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 181.6
Sample id Sample description nTPM
Amygdala
nTPM: 181.6
2814 Male, age 76, right hemisphere 201.7
2695 Female, age 67, right hemisphere 200.8
2514 Male, age 75, right hemisphere 171.3
2517 Female, age 94, left hemisphere 167.7
1987 Female, age 91, left hemisphere 166.4
Basal amygdala
nTPM: 173.9
2609 Male, age 75, right hemisphere 188.9
1955 Male, age 76, both hemispheres 184.7
2243 Female, age 91, right hemisphere 177.1
2110 Male, age 80, left hemisphere 168.8
2685 Female, age 94, left hemisphere 163.7
2827 Female, age 67, right hemisphere 160.1
Central amygdala
nTPM: 178.7
1905 Male, age 76, both hemispheres 198.8
2826 Female, age 94, left hemisphere 181.6
2515 Male, age 75, right hemisphere 172.6
2239 Male, age 80, left hemisphere 170.4
2701 Female, age 91, right hemisphere 170.2
Corticomedial amygdala
nTPM: 166.3
2535 Female, age 67, right hemisphere 170.7
2240 Male, age 76, both hemispheres 170.2
2242 Female, age 91, right hemisphere 169.3
2829 Male, age 80, left hemisphere 167.8
2428 Male, age 75, right hemisphere 159.9
2429 Female, age 94, left hemisphere 159.8
Lateral amygdala
nTPM: 168.7
1883 Male, age 76, both hemispheres 186.8
2534 Female, age 94, left hemisphere 181.5
2516 Male, age 75, right hemisphere 177.5
2255 Female, age 91, right hemisphere 164.9
2256 Male, age 80, left hemisphere 155.1
2830 Female, age 67, right hemisphere 146.4
Stria terminalis, bed nucleus
nTPM: 171.6
1974 Female, age 91, both hemispheres 179.9
2201 Male, age 74, unknown 177.4
2486 Female, age 94, both hemispheres 157.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 237.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 237.6
Samples: 152

Max nTPM: 606.7
Min nTPM: 45.7
Std nTPM: 83.3
Median nTPM: 224.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 606.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 582.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 526.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 452.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 446.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 418.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 401.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 389.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 386.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 352.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 344.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 343.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 339.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 337.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 337.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 336.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 335.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 330.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 323.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 317.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 316.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 306.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 303.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 300.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 296.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 296.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 294.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 288.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 288.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 285.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 284.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 284.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 284.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 283.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 281.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 277.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 276.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 276.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 274.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 272.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 270.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 269.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 268.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 267.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 266.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 266.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 266.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 261.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 257.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 257.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 255.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 255.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 253.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 251.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 251.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 248.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 248.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 246.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 246.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 244.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 244.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 242.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 240.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 239.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 236.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 234.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 234.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 234.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 232.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 231.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 229.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 228.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 228.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 227.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 224.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 224.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 223.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 223.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 222.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 221.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 221.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 220.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 219.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 218.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 218.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 217.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 216.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 216.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 215.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 215.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 210.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 209.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 208.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 208.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 208.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 208.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 207.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 206.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 205.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 203.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 203.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 195.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 191.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 191.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 190.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 189.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 187.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 187.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 187.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 187.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 186.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 184.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 184.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 183.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 180.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 180.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 177.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 176.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 175.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 173.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 171.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 170.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 170.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 170.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 168.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 167.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 166.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 162.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 159.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 159.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 159.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 156.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 155.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 153.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 150.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 149.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 149.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 148.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 148.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 147.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 146.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 144.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 144.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 142.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 136.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 134.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 130.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 129.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 129.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 119.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 112.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 45.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 266.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 266.9
FF:10151-102I7 76 years, female 266.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 89.9
Pig sample Sample description nTPM
Amygdala
nTPM: 89.9
Samples: 4

Max nTPM: 130.8
Min nTPM: 74.4
Sample A Female 130.8
Sample B Female 74.4
Sample C Male 77.3
Sample D Male 77.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 109.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 109.2
Samples: 4

Max nTPM: 152.9
Min nTPM: 91.1
Sample A Male 101.1
Sample B Male 91.6
Sample C Female 152.9
Sample D Female 91.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.0
75197594 Antisense, RP_060502_01_C04, Mouse strain C57BL/6J (56 days, male) 6.0

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