MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:182.2 nTPM
HPA:182.2 nTPM
GTEx:247.7 nTPM
FANTOM5:155.1 Scaled Tags Per Million
Pig:198.2 nTPM
Mouse:50.9 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 182.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 167.7
2586 Male, age 75, left hemisphere 201.3
2666 Male, age 74, left hemisphere 176.5
2019 Male, age 18, unknown 176.4
2828 Female, age 72, unknown 176.0
1827 Male, age 72, unknown 166.3
1870 Female, age 42, unknown 164.3
2219 Male, age 76, both hemispheres 158.6
1833 Male, age 53, unknown 157.8
1830 Male, age 51, unknown 153.0
2411 Female, age 72, unknown 146.5
Dorsal raphe nucleus
nTPM: 169.2
1828 Male, age 53, unknown 176.5
2047 Male, age 72, unknown 176.0
2298 Female, age 72, unknown 171.4
2750 Male, age 76, both hemispheres 165.5
2016 Female, age 72, unknown 156.7
Inferior colliculus
nTPM: 172.4
1890 Male, age 53, unknown 182.6
2097 Female, age 72, unknown 173.4
2849 Male, age 72, unknown 167.5
1848 Female, age 42, unknown 166.1
Median raphe nucleus
nTPM: 179.2
2220 Male, age 76, midline 179.2
Pedunculopontine tegmental nucleus
nTPM: 164.7
2334 Male, age 80, both hemispheres 172.0
1921 Female, age 85, both hemispheres 162.2
2338 Male, age 61, both hemispheres 159.8
Periaquaductal grey, anterior
nTPM: 172.8
1795 Male, age 51, unknown 181.1
1947 Male, age 18, unknown 173.7
2502 Female, age 75, unknown 163.6
Periaquaductal grey, dorsal
nTPM: 158.0
2850 Male, age 76, both hemispheres 169.8
1831 Male, age 72, unknown 155.9
1840 Male, age 53, unknown 153.2
2464 Female, age 72, unknown 153.2
Periaquaductal grey, lateral
nTPM: 160.1
2272 Male, age 74, both hemispheres 167.9
2053 Male, age 18, unknown 157.4
2140 Male, age 76, both hemispheres 155.1
Pretectal area
nTPM: 182.2
1944 Female, age 72, unknown 211.3
1816 Male, age 51, unknown 210.0
2007 Male, age 72, unknown 206.7
1817 Female, age 42, unknown 204.5
2667 Female, age 75, unknown 192.1
1815 Male, age 53, unknown 178.4
2224 Female, age 72, unknown 173.2
2825 Male, age 18, unknown 163.5
2273 Male, age 74, both hemispheres 157.2
2316 Male, age 76, right hemisphere 156.7
2407 Male, age 75, both hemispheres 150.7
Red nucleus
nTPM: 174.2
2785 Male, age 18, unknown 187.2
2503 Female, age 72, unknown 184.7
2725 Female, age 75, unknown 181.7
2769 Male, age 72, unknown 177.3
2823 Male, age 76, right hemisphere 174.1
2588 Male, age 74, left hemisphere 172.9
1821 Female, age 72, unknown 171.6
2227 Male, age 72, unknown 171.1
1954 Female, age 42, unknown 170.9
1865 Male, age 51, unknown 169.3
2584 Male, age 75, left hemisphere 166.1
1904 Male, age 53, unknown 163.2
Substantia nigra
nTPM: 172.8
2665 Male, age 74, both hemispheres 190.5
1889 Female, age 72, unknown 189.9
1916 Female, age 42, unknown 187.4
2583 Male, age 75, right hemisphere 174.1
1851 Male, age 51, unknown 171.9
1941 Male, age 53, unknown 168.2
2590 Female, age 75, unknown 163.1
2699 Male, age 18, unknown 162.4
2409 Female, age 72, unknown 161.2
2241 Male, age 72, unknown 158.8
Superior colliculus
nTPM: 167.6
2087 Female, age 72, unknown 182.8
1796 Male, age 53, unknown 181.7
2261 Male, age 18, unknown 171.8
2664 Male, age 75, both hemispheres 170.9
2668 Female, age 75, unknown 167.4
2587 Male, age 74, left hemisphere 164.7
1913 Female, age 42, unknown 161.1
1995 Male, age 72, unknown 159.9
1839 Male, age 51, unknown 158.3
1895 Male, age 76, right hemisphere 157.7
Ventral tegmental area
nTPM: 166.5
2218 Male, age 76, both hemispheres 175.1
1915 Female, age 42, unknown 171.7
1942 Male, age 51, unknown 165.5
2021 Male, age 53, unknown 165.5
2223 Female, age 72, unknown 163.1
2410 Female, age 72, unknown 158.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 247.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 247.7
Samples: 139

Max nTPM: 613.2
Min nTPM: 65.3
Std nTPM: 86.2
Median nTPM: 250.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 613.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 499.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 482.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 467.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 428.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 399.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 379.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 378.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 374.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 361.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 354.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 155.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 155.1
FF:10158-103A5 76 years, female 155.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 198.2
Pig sample Sample description nTPM
Midbrain
nTPM: 158.4
Samples: 4

Max nTPM: 199.5
Min nTPM: 124.9
Sample A Female 137.2
Sample B Female 124.9
Sample C Male 199.5
Sample D Male 171.9
Periaqueductal gray
nTPM: 110.1
Samples: 3

Max nTPM: 126.6
Min nTPM: 91.5
Sample B Female 112.2
Sample C Male 126.6
Sample D Male 91.5
Substantia nigra
nTPM: 133.7
Samples: 4

Max nTPM: 202.2
Min nTPM: 92.1
Sample A Female 202.2
Sample B Female 99.8
Sample C Male 140.7
Sample D Male 92.1
Superior colliculi
nTPM: 198.2
Samples: 4

Max nTPM: 254.2
Min nTPM: 162.6
Sample A Female 254.2
Sample B Female 162.6
Sample C Male 213.0
Sample D Male 162.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.9
Samples: 4

Max nTPM: 73.1
Min nTPM: 34.8
Sample A Male 73.1
Sample B Male 44.9
Sample C Female 34.8
Sample D Female 50.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
75197594 Antisense, RP_060502_01_C04, Mouse strain C57BL/6J (56 days, male) 5.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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