MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:316.4 nTPM
HPA:316.4 nTPM
GTEx:305.1 nTPM
FANTOM5:2509.5 Scaled Tags Per Million
Pig:243.6 nTPM
Mouse:603.8 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 316.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 230.1
2019 Male, age 18, unknown 306.5
1870 Female, age 42, unknown 296.3
2411 Female, age 72, unknown 287.5
1830 Male, age 51, unknown 266.6
1833 Male, age 53, unknown 250.7
2828 Female, age 72, unknown 234.3
2219 Male, age 76, both hemispheres 192.3
1827 Male, age 72, unknown 165.6
2666 Male, age 74, left hemisphere 153.8
2586 Male, age 75, left hemisphere 147.2
Dorsal raphe nucleus
nTPM: 218.1
2750 Male, age 76, both hemispheres 366.4
1828 Male, age 53, unknown 199.5
2016 Female, age 72, unknown 190.7
2298 Female, age 72, unknown 173.0
2047 Male, age 72, unknown 160.8
Inferior colliculus
nTPM: 184.9
1848 Female, age 42, unknown 196.5
1890 Male, age 53, unknown 192.7
2097 Female, age 72, unknown 187.4
2849 Male, age 72, unknown 163.1
Median raphe nucleus
nTPM: 255.2
2220 Male, age 76, midline 255.2
Pedunculopontine tegmental nucleus
nTPM: 262.0
2338 Male, age 61, both hemispheres 306.4
2334 Male, age 80, both hemispheres 274.2
1921 Female, age 85, both hemispheres 205.4
Periaquaductal grey, anterior
nTPM: 171.3
2502 Female, age 75, unknown 197.1
1947 Male, age 18, unknown 164.4
1795 Male, age 51, unknown 152.6
Periaquaductal grey, dorsal
nTPM: 151.7
2464 Female, age 72, unknown 186.3
1831 Male, age 72, unknown 151.6
2850 Male, age 76, both hemispheres 134.7
1840 Male, age 53, unknown 134.3
Periaquaductal grey, lateral
nTPM: 170.5
2272 Male, age 74, both hemispheres 188.4
2053 Male, age 18, unknown 170.6
2140 Male, age 76, both hemispheres 152.4
Pretectal area
nTPM: 177.9
2273 Male, age 74, both hemispheres 210.6
2316 Male, age 76, right hemisphere 207.9
1815 Male, age 53, unknown 202.9
2667 Female, age 75, unknown 196.3
1817 Female, age 42, unknown 190.8
2007 Male, age 72, unknown 176.6
2825 Male, age 18, unknown 169.9
2224 Female, age 72, unknown 169.0
2407 Male, age 75, both hemispheres 154.8
1944 Female, age 72, unknown 141.0
1816 Male, age 51, unknown 136.7
Red nucleus
nTPM: 316.4
1821 Female, age 72, unknown 391.0
1865 Male, age 51, unknown 382.3
1904 Male, age 53, unknown 365.9
2227 Male, age 72, unknown 364.0
2769 Male, age 72, unknown 358.9
2823 Male, age 76, right hemisphere 356.7
1954 Female, age 42, unknown 342.9
2785 Male, age 18, unknown 315.3
2503 Female, age 72, unknown 306.9
2588 Male, age 74, left hemisphere 220.4
2725 Female, age 75, unknown 207.5
2584 Male, age 75, left hemisphere 185.1
Substantia nigra
nTPM: 195.5
1851 Male, age 51, unknown 235.7
2409 Female, age 72, unknown 219.2
1889 Female, age 72, unknown 217.2
2241 Male, age 72, unknown 207.4
2699 Male, age 18, unknown 199.3
2590 Female, age 75, unknown 193.1
1916 Female, age 42, unknown 189.1
2583 Male, age 75, right hemisphere 182.0
1941 Male, age 53, unknown 175.8
2665 Male, age 74, both hemispheres 136.1
Superior colliculus
nTPM: 201.7
2587 Male, age 74, left hemisphere 267.4
1913 Female, age 42, unknown 266.3
1995 Male, age 72, unknown 257.4
1895 Male, age 76, right hemisphere 211.6
2668 Female, age 75, unknown 200.5
1839 Male, age 51, unknown 199.3
1796 Male, age 53, unknown 179.2
2087 Female, age 72, unknown 166.8
2261 Male, age 18, unknown 145.8
2664 Male, age 75, both hemispheres 122.9
Ventral tegmental area
nTPM: 256.1
2223 Female, age 72, unknown 391.8
2410 Female, age 72, unknown 291.5
2218 Male, age 76, both hemispheres 249.2
2021 Male, age 53, unknown 206.1
1942 Male, age 51, unknown 202.3
1915 Female, age 42, unknown 195.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 305.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 305.1
Samples: 139

Max nTPM: 1633.4
Min nTPM: 88.1
Std nTPM: 183.1
Median nTPM: 255.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1633.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 871.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 813.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 750.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 738.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 665.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 624.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 577.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 565.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 558.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 518.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2509.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2509.5
FF:10158-103A5 76 years, female 2509.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 243.6
Pig sample Sample description nTPM
Midbrain
nTPM: 243.6
Samples: 4

Max nTPM: 538.5
Min nTPM: 113.3
Sample A Female 538.5
Sample B Female 200.0
Sample C Male 122.7
Sample D Male 113.3
Periaqueductal gray
nTPM: 126.9
Samples: 3

Max nTPM: 147.6
Min nTPM: 95.7
Sample B Female 147.6
Sample C Male 95.7
Sample D Male 137.4
Substantia nigra
nTPM: 218.3
Samples: 4

Max nTPM: 296.1
Min nTPM: 144.7
Sample A Female 222.5
Sample B Female 209.7
Sample C Male 144.7
Sample D Male 296.1
Superior colliculi
nTPM: 203.4
Samples: 4

Max nTPM: 237.0
Min nTPM: 172.4
Sample A Female 237.0
Sample B Female 198.5
Sample C Male 172.4
Sample D Male 205.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 603.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 603.8
Samples: 4

Max nTPM: 639.0
Min nTPM: 562.4
Sample A Male 586.1
Sample B Male 562.4
Sample C Female 639.0
Sample D Female 627.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
79903768 Antisense, RP_071204_02_B09, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.