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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:310.3 nTPM
HPA:310.3 nTPM
GTEx:882.3 nTPM
FANTOM5:1851.2 Scaled Tags Per Million
Pig:375.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 310.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 253.6
1981 Female, age 72, midline 349.0
2048 Male, age 55, midline 264.7
2816 Male, age 47, midline 252.6
2194 Female, age 79, both hemispheres 210.6
2565 Male, age 75, midline 191.3
Cervical spinal cord, dorsal horn
nTPM: 310.3
2296 Male, age 66, both hemispheres 565.9
2173 Female, age 72, unknown 416.4
2069 Male, age 47, both hemispheres 350.6
1877 Male, age 55, unknown 221.4
2721 Male, age 90, both hemispheres 157.3
2297 Male, age 75, both hemispheres 150.2
Cervical spinal cord, ventral horn
nTPM: 265.1
2098 Female, age 72, unknown 414.0
2068 Male, age 55, unknown 314.7
2480 Male, age 75, both hemispheres 242.4
2295 Male, age 66, both hemispheres 216.8
2809 Male, age 90, both hemispheres 214.2
2820 Female, age 79, both hemispheres 188.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 882.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 882.3
Samples: 159

Max nTPM: 2129.3
Min nTPM: 188.2
Std nTPM: 379.1
Median nTPM: 868.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2129.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1998.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1971.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1904.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1783.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1765.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1596.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1564.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1533.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1524.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1502.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1463.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1458.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1447.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1423.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1407.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1377.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1362.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1360.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1315.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1305.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1305.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1284.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1272.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1248.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1222.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1205.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1201.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1197.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1186.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1183.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1161.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1123.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1108.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1107.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1103.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1101.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1090.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1086.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1085.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1066.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1063.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1062.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1058.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1057.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1050.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1048.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1047.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1038.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1024.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1021.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1011.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1003.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 997.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 994.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 989.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 982.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 973.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 971.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 959.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 958.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 944.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 942.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 939.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 937.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 929.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 917.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 910.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 909.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 909.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 907.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 905.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 904.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 899.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 899.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 891.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 888.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 881.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 877.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 868.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 866.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 835.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 828.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 810.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 804.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 803.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 792.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 785.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 783.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 781.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 773.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 742.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 739.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 731.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 724.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 723.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 717.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 715.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 709.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 708.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 708.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 701.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 696.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 692.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 691.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 689.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 688.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 684.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 684.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 677.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 672.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 671.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 670.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 661.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 661.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 658.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 653.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 652.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 638.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 638.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 625.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 624.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 623.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 596.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 577.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 575.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 570.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 557.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 554.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 540.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 540.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 537.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 533.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 527.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 518.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 509.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 505.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 481.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 475.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 472.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 467.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 459.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 405.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 393.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 383.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 371.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 369.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 362.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 361.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 359.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 357.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 345.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 322.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 286.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 280.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 244.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 202.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 192.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 188.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1851.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1851.2
FF:10159-103A6 76 years, female 2059.5
FF:10181-103D1 60 years, female 1642.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 375.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 354.9
Samples: 4

Max nTPM: 414.2
Min nTPM: 282.8
Sample A Female 282.8
Sample B Female 414.2
Sample C Male 405.4
Sample D Male 317.1
Ventral spinal cord
nTPM: 375.0
Samples: 4

Max nTPM: 519.0
Min nTPM: 289.0
Sample A Female 344.6
Sample B Female 347.4
Sample C Male 289.0
Sample D Male 519.0

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