MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:75.6 nTPM
HPA:75.6 nTPM
GTEx:60.1 nTPM
FANTOM5:67.7 Scaled Tags Per Million
Pig:2.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 75.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.4
2666 Male, age 74, left hemisphere 80.4
1870 Female, age 42, unknown 75.9
2411 Female, age 72, unknown 74.6
1827 Male, age 72, unknown 72.7
2586 Male, age 75, left hemisphere 72.7
2019 Male, age 18, unknown 72.3
1830 Male, age 51, unknown 72.0
2828 Female, age 72, unknown 71.2
2219 Male, age 76, both hemispheres 71.0
1833 Male, age 53, unknown 70.8
Dorsal raphe nucleus
nTPM: 72.2
2750 Male, age 76, both hemispheres 75.3
1828 Male, age 53, unknown 73.3
2016 Female, age 72, unknown 72.4
2047 Male, age 72, unknown 70.3
2298 Female, age 72, unknown 69.9
Inferior colliculus
nTPM: 71.0
1890 Male, age 53, unknown 72.7
2849 Male, age 72, unknown 71.6
2097 Female, age 72, unknown 70.0
1848 Female, age 42, unknown 69.8
Median raphe nucleus
nTPM: 73.4
2220 Male, age 76, midline 73.4
Pedunculopontine tegmental nucleus
nTPM: 75.0
2338 Male, age 61, both hemispheres 78.5
2334 Male, age 80, both hemispheres 75.7
1921 Female, age 85, both hemispheres 70.8
Periaquaductal grey, anterior
nTPM: 70.1
2502 Female, age 75, unknown 70.8
1947 Male, age 18, unknown 70.0
1795 Male, age 51, unknown 69.5
Periaquaductal grey, dorsal
nTPM: 71.4
2850 Male, age 76, both hemispheres 72.6
1831 Male, age 72, unknown 71.8
1840 Male, age 53, unknown 71.7
2464 Female, age 72, unknown 69.7
Periaquaductal grey, lateral
nTPM: 69.3
2140 Male, age 76, both hemispheres 71.3
2053 Male, age 18, unknown 70.3
2272 Male, age 74, both hemispheres 66.2
Pretectal area
nTPM: 71.0
1815 Male, age 53, unknown 74.3
1816 Male, age 51, unknown 72.9
1817 Female, age 42, unknown 72.5
2007 Male, age 72, unknown 72.3
1944 Female, age 72, unknown 71.6
2825 Male, age 18, unknown 71.5
2316 Male, age 76, right hemisphere 71.0
2667 Female, age 75, unknown 70.7
2224 Female, age 72, unknown 69.8
2407 Male, age 75, both hemispheres 67.6
2273 Male, age 74, both hemispheres 67.2
Red nucleus
nTPM: 75.6
2503 Female, age 72, unknown 79.6
1954 Female, age 42, unknown 77.5
2588 Male, age 74, left hemisphere 77.1
2725 Female, age 75, unknown 76.9
2823 Male, age 76, right hemisphere 76.4
1904 Male, age 53, unknown 76.2
1865 Male, age 51, unknown 76.0
2769 Male, age 72, unknown 74.8
2227 Male, age 72, unknown 74.6
1821 Female, age 72, unknown 73.9
2584 Male, age 75, left hemisphere 72.9
2785 Male, age 18, unknown 71.4
Substantia nigra
nTPM: 75.2
1916 Female, age 42, unknown 79.6
2699 Male, age 18, unknown 78.7
2241 Male, age 72, unknown 77.5
2665 Male, age 74, both hemispheres 77.1
1851 Male, age 51, unknown 76.7
2409 Female, age 72, unknown 75.5
1889 Female, age 72, unknown 72.3
2583 Male, age 75, right hemisphere 71.9
2590 Female, age 75, unknown 71.2
1941 Male, age 53, unknown 71.0
Superior colliculus
nTPM: 71.6
2668 Female, age 75, unknown 73.3
2587 Male, age 74, left hemisphere 72.8
1796 Male, age 53, unknown 72.5
1895 Male, age 76, right hemisphere 71.7
2087 Female, age 72, unknown 71.7
1913 Female, age 42, unknown 71.4
2261 Male, age 18, unknown 71.0
1839 Male, age 51, unknown 70.7
1995 Male, age 72, unknown 70.4
2664 Male, age 75, both hemispheres 70.3
Ventral tegmental area
nTPM: 74.0
1915 Female, age 42, unknown 76.4
2223 Female, age 72, unknown 75.9
2410 Female, age 72, unknown 74.1
2218 Male, age 76, both hemispheres 73.1
1942 Male, age 51, unknown 72.7
2021 Male, age 53, unknown 71.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.1
Samples: 139

Max nTPM: 180.5
Min nTPM: 22.0
Std nTPM: 21.5
Median nTPM: 55.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 180.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 149.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 123.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 120.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 111.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 109.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 104.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 96.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 94.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 89.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 87.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.7
FF:10158-103A5 76 years, female 67.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.6
Pig sample Sample description nTPM
Midbrain
nTPM: 2.4
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.8
Sample A Female 3.1
Sample B Female 2.4
Sample C Male 1.8
Sample D Male 2.2
Periaqueductal gray
nTPM: 2.4
Samples: 3

Max nTPM: 2.6
Min nTPM: 2.3
Sample B Female 2.3
Sample C Male 2.4
Sample D Male 2.6
Substantia nigra
nTPM: 2.6
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 2.4
Sample C Male 2.6
Sample D Male 3.2
Superior colliculi
nTPM: 2.0
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.6
Sample A Female 1.6
Sample B Female 1.8
Sample C Male 2.0
Sample D Male 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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