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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:690.1 nTPM
HPA:690.1 nTPM
GTEx:704.7 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:164.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 690.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 646.0
1981 Female, age 72, midline 679.9
2565 Male, age 75, midline 650.7
2048 Male, age 55, midline 649.6
2194 Female, age 79, both hemispheres 629.5
2816 Male, age 47, midline 620.4
Cervical spinal cord, dorsal horn
nTPM: 650.3
2173 Female, age 72, unknown 704.0
2069 Male, age 47, both hemispheres 681.3
2296 Male, age 66, both hemispheres 663.7
1877 Male, age 55, unknown 656.6
2721 Male, age 90, both hemispheres 608.9
2297 Male, age 75, both hemispheres 587.0
Cervical spinal cord, ventral horn
nTPM: 690.1
2809 Male, age 90, both hemispheres 737.9
2098 Female, age 72, unknown 732.9
2480 Male, age 75, both hemispheres 721.4
2295 Male, age 66, both hemispheres 672.9
2068 Male, age 55, unknown 661.0
2820 Female, age 79, both hemispheres 614.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 704.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 704.7
Samples: 159

Max nTPM: 1342.6
Min nTPM: 381.2
Std nTPM: 167.9
Median nTPM: 685.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1342.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1275.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1114.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1096.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1089.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1089.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1057.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1033.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 971.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 956.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 940.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 937.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 933.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 928.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 927.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 926.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 924.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 918.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 917.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 917.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 908.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 907.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 897.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 886.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 875.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 870.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 852.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 849.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 829.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 823.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 818.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 814.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 813.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 810.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 810.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 810.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 807.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 806.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 805.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 801.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 794.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 791.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 788.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 787.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 785.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 782.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 778.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 777.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 774.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 773.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 770.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 769.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 769.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 766.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 765.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 761.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 758.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 752.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 741.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 739.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 738.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 736.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 736.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 730.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 727.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 721.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 720.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 716.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 714.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 713.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 706.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 702.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 701.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 700.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 698.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 697.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 689.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 687.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 686.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 685.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 683.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 673.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 671.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 669.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 666.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 666.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 662.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 660.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 659.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 659.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 659.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 656.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 654.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 653.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 653.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 652.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 651.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 651.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 639.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 635.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 633.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 632.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 631.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 625.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 624.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 624.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 609.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 608.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 608.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 605.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 602.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 597.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 596.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 596.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 595.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 594.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 593.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 592.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 584.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 582.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 579.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 574.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 574.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 569.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 566.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 563.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 557.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 550.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 550.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 550.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 549.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 545.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 544.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 544.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 542.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 542.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 539.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 536.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 533.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 529.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 529.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 526.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 512.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 500.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 498.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 496.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 494.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 491.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 487.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 486.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 482.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 461.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 460.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 450.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 444.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 436.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 415.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 390.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 381.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 29.2
FF:10181-103D1 60 years, female 34.7
FF:10159-103A6 76 years, female 23.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 164.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 164.2
Samples: 4

Max nTPM: 231.2
Min nTPM: 131.9
Sample A Female 133.3
Sample B Female 160.5
Sample C Male 231.2
Sample D Male 131.9
Ventral spinal cord
nTPM: 163.6
Samples: 4

Max nTPM: 187.9
Min nTPM: 145.4
Sample A Female 145.4
Sample B Female 171.3
Sample C Male 187.9
Sample D Male 149.6

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