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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:677.4 nTPM
HPA:677.4 nTPM
FANTOM5:17.5 Scaled Tags Per Million
Pig:136.5 nTPM
Mouse:330.4 nTPM
Allen mouse:16.8 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 677.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 637.2
2396 Male, age 61, right hemisphere 698.0
2497 Male, age 66, unknown 611.9
2032 Female, age 42, unknown 601.6
Centromedial thalamic nucleus
nTPM: 616.1
2279 Female, age 85, left hemisphere 633.1
2401 Male, age 76, right hemisphere 599.2
Habenula
nTPM: 608.0
1957 Male, age 80, both hemispheres 618.4
2252 Male, age 62, unknown 607.2
2203 Male, age 61, left hemisphere 603.2
2276 Male, age 66, unknown 603.1
Lateral geniculate body
nTPM: 615.3
2575 Female, age 94, right hemisphere 637.7
2857 Male, age 74, right hemisphere 633.2
2659 Male, age 66, unknown 626.1
2035 Female, age 72, unknown 619.0
2841 Male, age 80, both hemispheres 617.1
2399 Male, age 61, left hemisphere 603.7
1953 Male, age 62, unknown 603.5
2106 Female, age 67, right hemisphere 582.2
Lateral thalamic nuclei
nTPM: 616.6
2577 Male, age 74, both hemispheres 634.7
2573 Female, age 94, left hemisphere 626.7
2661 Female, age 72, unknown 619.4
2765 Female, age 67, both hemispheres 610.5
1903 Male, age 76, left hemisphere 591.5
Medial dorsal thalamic nucleus
nTPM: 624.2
2572 Female, age 94, right hemisphere 701.3
2039 Female, age 72, unknown 643.3
1971 Male, age 61, right hemisphere 638.2
2492 Male, age 75, right hemisphere 629.5
1810 Male, age 48, unknown 623.3
1930 Female, age 42, unknown 622.0
2498 Male, age 66, unknown 617.8
2026 Male, age 62, unknown 617.4
2576 Male, age 74, both hemispheres 614.9
1859 Male, age 76, both hemispheres 610.7
2402 Female, age 67, both hemispheres 608.9
2660 Female, age 72, unknown 601.5
2283 Male, age 80, right hemisphere 586.0
Medial geniculate body
nTPM: 621.6
2571 Male, age 75, right hemisphere 690.2
2650 Female, age 94, left hemisphere 636.5
2049 Male, age 76, both hemispheres 627.7
2657 Male, age 74, right hemisphere 613.9
2207 Male, age 80, right hemisphere 601.3
2217 Female, age 72, unknown 594.7
1811 Female, age 42, unknown 587.1
Nucleus reuniens
nTPM: 630.2
2210 Female, age 85, left hemisphere 640.8
2212 Female, age 67, left hemisphere 625.0
2205 Male, age 80, left hemisphere 624.7
Nucleus rhomboideus
nTPM: 622.5
2213 Female, age 67, left hemisphere 639.6
2280 Female, age 85, left hemisphere 626.6
2206 Male, age 80, both hemispheres 601.4
Posterior thalamic nucleus
nTPM: 655.7
2649 Female, age 94, both hemispheres 771.9
2655 Male, age 74, right hemisphere 648.1
2495 Female, age 67, right hemisphere 604.1
2266 Male, age 76, right hemisphere 598.7
Pulvinar
nTPM: 606.7
2499 Male, age 66, unknown 636.5
2398 Male, age 61, left hemisphere 611.8
2724 Male, age 74, right hemisphere 610.5
1972 Male, age 62, unknown 609.2
1929 Male, age 48, unknown 607.7
2496 Female, age 67, right hemisphere 607.5
2582 Female, age 72, unknown 604.0
2214 Male, age 76, right hemisphere 599.0
1932 Male, age 80, right hemisphere 598.6
1899 Female, age 42, unknown 582.0
Subthalamic nucleus
nTPM: 636.0
2124 Male, age 62, unknown 661.2
2056 Female, age 72, unknown 646.2
2658 Male, age 74, both hemispheres 635.8
2779 Female, age 42, unknown 635.1
2275 Male, age 66, unknown 631.3
2216 Male, age 48, unknown 626.8
2406 Female, age 72, unknown 626.3
2282 Male, age 61, both hemispheres 625.4
Ventral posterolateral thalamic nucleus
nTPM: 615.4
2397 Male, age 61, right hemisphere 644.2
2578 Male, age 74, both hemispheres 628.0
2570 Male, age 75, right hemisphere 619.1
2740 Male, age 76, right hemisphere 609.8
2197 Male, age 80, both hemispheres 604.7
2581 Female, age 72, unknown 586.4
Ventral posteromedial thalamic nucleus
nTPM: 608.6
2281 Male, age 75, right hemisphere 622.5
2202 Male, age 61, left hemisphere 619.7
2653 Male, age 74, both hemispheres 615.8
2127 Male, age 76, right hemisphere 604.4
2758 Male, age 80, both hemispheres 580.7
Ventral thalamic nuclei
nTPM: 616.8
2291 Female, age 72, unknown 639.1
2580 Male, age 66, unknown 637.7
1845 Male, age 48, unknown 621.3
2285 Male, age 62, unknown 614.5
1912 Female, age 42, unknown 613.8
2652 Male, age 74, left hemisphere 613.4
1860 Male, age 76, both hemispheres 613.0
2204 Male, age 80, both hemispheres 600.7
2858 Female, age 72, unknown 597.3
Ventromedial nucleus
nTPM: 677.4
1982 Female, age 72, unknown 693.0
1822 Female, age 42, unknown 661.9
Zona incerta
nTPM: 615.2
2822 Male, age 74, right hemisphere 634.3
2403 Male, age 62, unknown 630.8
2215 Male, age 66, unknown 615.4
2663 Female, age 72, unknown 601.7
2208 Male, age 80, right hemisphere 593.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 17.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 17.5
FF:10154-103A1 76 years, female 17.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 136.5
Pig sample Sample description nTPM
Thalamus
nTPM: 136.5
Samples: 4

Max nTPM: 150.6
Min nTPM: 118.3
Sample A Female 150.6
Sample B Female 118.3
Sample C Male 141.9
Sample D Male 135.2

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 330.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 330.4
Samples: 4

Max nTPM: 354.2
Min nTPM: 300.4
Sample A Male 300.4
Sample B Male 354.2
Sample C Female 330.6
Sample D Female 336.3

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 16.8
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 16.8
74819238 Antisense, RP_060315_02_C02, Mouse strain C57BL/6J (56 days, male) 18.8
68441520 Antisense, RP_041214_02_E05, Mouse strain C57BL/6J (56 days, male) 14.7

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