MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:165.3 nTPM
HPA:165.3 nTPM
GTEx:131.3 nTPM
FANTOM5:128.1 Scaled Tags Per Million
Pig:149.7 nTPM
Mouse:196.1 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 165.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 160.8
2586 Male, age 75, left hemisphere 169.0
2666 Male, age 74, left hemisphere 164.7
1870 Female, age 42, unknown 164.2
1827 Male, age 72, unknown 161.5
1833 Male, age 53, unknown 159.6
1830 Male, age 51, unknown 158.7
2019 Male, age 18, unknown 158.6
2411 Female, age 72, unknown 158.6
2828 Female, age 72, unknown 157.6
2219 Male, age 76, both hemispheres 155.6
Dorsal raphe nucleus
nTPM: 163.6
2298 Female, age 72, unknown 167.9
1828 Male, age 53, unknown 165.8
2047 Male, age 72, unknown 163.0
2750 Male, age 76, both hemispheres 161.5
2016 Female, age 72, unknown 159.6
Inferior colliculus
nTPM: 161.9
2097 Female, age 72, unknown 164.1
1848 Female, age 42, unknown 163.1
2849 Male, age 72, unknown 160.4
1890 Male, age 53, unknown 160.1
Median raphe nucleus
nTPM: 162.3
2220 Male, age 76, midline 162.3
Pedunculopontine tegmental nucleus
nTPM: 163.6
2334 Male, age 80, both hemispheres 166.3
2338 Male, age 61, both hemispheres 163.5
1921 Female, age 85, both hemispheres 161.1
Periaquaductal grey, anterior
nTPM: 165.3
1947 Male, age 18, unknown 167.3
2502 Female, age 75, unknown 165.6
1795 Male, age 51, unknown 163.1
Periaquaductal grey, dorsal
nTPM: 160.6
1840 Male, age 53, unknown 165.1
1831 Male, age 72, unknown 160.0
2850 Male, age 76, both hemispheres 159.1
2464 Female, age 72, unknown 158.2
Periaquaductal grey, lateral
nTPM: 158.9
2053 Male, age 18, unknown 159.7
2140 Male, age 76, both hemispheres 158.8
2272 Male, age 74, both hemispheres 158.2
Pretectal area
nTPM: 163.1
1944 Female, age 72, unknown 168.2
1817 Female, age 42, unknown 166.9
1816 Male, age 51, unknown 166.7
2007 Male, age 72, unknown 164.7
2825 Male, age 18, unknown 163.7
2224 Female, age 72, unknown 163.5
1815 Male, age 53, unknown 162.6
2667 Female, age 75, unknown 161.2
2273 Male, age 74, both hemispheres 160.9
2407 Male, age 75, both hemispheres 159.5
2316 Male, age 76, right hemisphere 155.7
Red nucleus
nTPM: 160.5
1821 Female, age 72, unknown 166.4
2584 Male, age 75, left hemisphere 162.0
2725 Female, age 75, unknown 161.5
2588 Male, age 74, left hemisphere 161.3
2227 Male, age 72, unknown 160.7
2785 Male, age 18, unknown 160.4
2503 Female, age 72, unknown 160.3
2769 Male, age 72, unknown 160.0
1954 Female, age 42, unknown 159.9
1865 Male, age 51, unknown 159.6
1904 Male, age 53, unknown 157.6
2823 Male, age 76, right hemisphere 156.0
Substantia nigra
nTPM: 164.9
1916 Female, age 42, unknown 169.5
2241 Male, age 72, unknown 168.3
2665 Male, age 74, both hemispheres 167.1
1851 Male, age 51, unknown 166.8
1941 Male, age 53, unknown 165.9
2590 Female, age 75, unknown 163.7
1889 Female, age 72, unknown 163.1
2699 Male, age 18, unknown 161.9
2583 Male, age 75, right hemisphere 161.6
2409 Female, age 72, unknown 160.8
Superior colliculus
nTPM: 162.5
2664 Male, age 75, both hemispheres 165.4
2087 Female, age 72, unknown 164.8
2587 Male, age 74, left hemisphere 164.4
2261 Male, age 18, unknown 163.8
2668 Female, age 75, unknown 163.7
1796 Male, age 53, unknown 162.7
1839 Male, age 51, unknown 162.5
1895 Male, age 76, right hemisphere 159.7
1995 Male, age 72, unknown 159.2
1913 Female, age 42, unknown 158.5
Ventral tegmental area
nTPM: 163.7
1915 Female, age 42, unknown 167.2
2223 Female, age 72, unknown 165.2
2410 Female, age 72, unknown 165.2
1942 Male, age 51, unknown 163.1
2021 Male, age 53, unknown 161.7
2218 Male, age 76, both hemispheres 159.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 131.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 131.3
Samples: 139

Max nTPM: 242.1
Min nTPM: 82.4
Std nTPM: 23.5
Median nTPM: 129.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 242.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 206.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 204.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 182.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 171.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 169.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 168.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 167.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 167.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 165.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 164.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.1
FF:10158-103A5 76 years, female 128.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 149.7
Pig sample Sample description nTPM
Midbrain
nTPM: 145.1
Samples: 4

Max nTPM: 191.2
Min nTPM: 111.5
Sample A Female 191.2
Sample B Female 145.7
Sample C Male 131.8
Sample D Male 111.5
Periaqueductal gray
nTPM: 115.7
Samples: 3

Max nTPM: 123.2
Min nTPM: 104.7
Sample B Female 119.3
Sample C Male 123.2
Sample D Male 104.7
Substantia nigra
nTPM: 149.7
Samples: 4

Max nTPM: 199.3
Min nTPM: 115.4
Sample A Female 199.3
Sample B Female 141.8
Sample C Male 142.2
Sample D Male 115.4
Superior colliculi
nTPM: 135.8
Samples: 4

Max nTPM: 160.5
Min nTPM: 123.0
Sample A Female 160.5
Sample B Female 124.1
Sample C Male 135.7
Sample D Male 123.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 196.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 196.1
Samples: 4

Max nTPM: 203.3
Min nTPM: 187.9
Sample A Male 203.3
Sample B Male 187.9
Sample C Female 191.6
Sample D Female 201.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
69445415 Antisense, RP_050419_01_B02, Mouse strain C57BL/6J (56 days, male) 7.7
74988744 Antisense, RP_060315_04_B12, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.