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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:158.4 nTPM
GTEx:158.4 nTPM
FANTOM5:481.5 Scaled Tags Per Million
Mouse:302.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 158.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 158.4
Samples: 105

Max nTPM: 235.1
Min nTPM: 114.3
Std nTPM: 25.3
Median nTPM:
495_1 57 years, female 235.1
162_1 79 years, female 221.4
149_1 88 years, male 215.7
490_1 67 years, female 211.1
89_1 63 years, male 206.5
81_1 67 years, male 206.2
4_1 88 years, female 205.1
126_1 63 years, male 202.7
32_1 67 years, male 200.9
139_1 64 years, female 199.6
2_1 77 years, female 198.7
35_1 74 years, female 193.4
491_1 89 years, female 189.2
415_1 77 years, female 187.5
43_1 64 years, female 187.3
17_1 71 years, male 186.3
117_1 61 years, male 185.8
137_1 83 years, male 183.6
142_1 61 years, female 181.9
18_1 88 years, male 181.8
254_1 77 years, female 179.5
377_1 82 years, female 179.2
466_1 57 years, female 177.9
246_1 77 years, male 177.7
145_1 84 years, male 177.6
518_1 75 years, female 175.9
414_1 84 years, female 174.9
109_1 81 years, female 173.3
265_1 87 years, male 173.2
315_1 62 years, female 171.2
353_1 82 years, female 169.0
9_1 66 years, female 168.7
217_1 76 years, male 168.5
115_1 83 years, male 167.2
163_1 78 years, male 167.2
153_1 70 years, female 165.3
119_1 70 years, female 165.1
319_1 81 years, male 164.7
375_1 74 years, female 164.6
120_1 70 years, female 162.8
405_1 91 years, male 162.7
6_1 73 years, female 162.2
251_1 78 years, male 162.0
322_1 76 years, male 161.9
352_1 62 years, male 161.6
501_1 88 years, male 161.1
384_1 83 years, male 160.6
189_1 76 years, male 159.3
425_1 59 years, female 158.4
354_1 81 years, female 157.4
406_1 79 years, male 153.8
229_1 69 years, female 153.1
42_1 85 years, male 152.1
307_1 66 years, female 152.0
376_1 75 years, female 152.0
348_1 84 years, male 151.3
320_1 89 years, female 149.7
321_1 62 years, female 148.6
99_1 64 years, male 148.3
311_1 78 years, male 148.2
503_1 68 years, male 148.2
468_1 89 years, male 148.1
351_1 91 years, male 148.0
379_1 60 years, male 147.8
452_1 88 years, female 147.3
264_1 73 years, female 146.6
389_1 86 years, female 146.1
291_1 76 years, male 145.4
394_1 75 years, female 144.9
526_1 61 years, male 143.5
288_1 66 years, female 142.2
293_1 68 years, female 141.1
413_1 59 years, female 141.0
355_1 70 years, female 140.7
356_1 87 years, female 139.4
350_1 84 years, female 139.0
237_1 82 years, male 138.9
404_1 82 years, female 138.4
243_1 75 years, male 138.2
349_1 83 years, male 138.1
396_1 62 years, male 137.9
386_1 76 years, male 137.8
172_1 72 years, female 137.6
499_1 55 years, female 137.6
316_1 62 years, male 137.2
324_1 76 years, male 136.7
347_1 72 years, male 136.6
335_1 73 years, female 136.4
308_1 70 years, female 136.2
447_1 81 years, male 135.9
286_1 68 years, female 133.7
517_1 88 years, male 132.2
292_1 71 years, male 131.6
266_1 85 years, male 127.9
314_1 67 years, male 127.1
218_1 71 years, female 126.9
313_1 79 years, female 125.8
295_1 61 years, female 125.3
177_1 74 years, male 124.8
41_1 94 years, female 124.7
318_1 68 years, male 124.5
480_1 63 years, male 124.5
506_1 65 years, male 121.9
173_1 67 years, male 116.3
317_1 60 years, male 114.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 481.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 481.5
FF:10030-101E3 24-65 years, mixed 481.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 302.2
Mouse sample Sample description nTPM
Retina
nTPM: 302.2
Samples: 4

Max nTPM: 330.2
Min nTPM: 275.6
Sample A Male 324.3
Sample B Male 278.6
Sample C Female 330.2
Sample D Female 275.6

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.