BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.8 nTPM
HPA:50.8 nTPM
GTEx:17.3 nTPM
FANTOM5:0.4 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 47.5
2481 Female, age 94, left hemisphere 53.1
1857 Female, age 85, left hemisphere 47.6
2846 Female, age 79, unknown 47.0
2290 Female, age 72, unknown 46.7
1854 Male, age 80, left hemisphere 46.5
2289 Male, age 61, right hemisphere 46.5
1781 Male, age 74, unknown 46.4
2288 Male, age 75, left hemisphere 46.3
Claustrum
nTPM: 46.6
2196 Female, age 79, unknown 47.4
2491 Male, age 75, both hemispheres 47.0
2198 Male, age 80, both hemispheres 46.7
2645 Female, age 72, unknown 46.7
1956 Male, age 74, unknown 46.4
2292 Female, age 85, both hemispheres 46.4
2568 Male, age 61, both hemispheres 46.4
2284 Female, age 91, both hemispheres 46.3
2392 Female, age 94, both hemispheres 46.3
Globus pallidus, externus
nTPM: 50.8
2772 Female, age 79, unknown 55.4
2395 Male, age 75, both hemispheres 52.3
1996 Male, age 80, right hemisphere 51.8
2567 Female, age 72, unknown 48.2
2646 Male, age 61, right hemisphere 46.6
Globus pallidus, internus
nTPM: 50.2
2483 Female, age 94, right hemisphere 53.7
2287 Male, age 75, right hemisphere 52.6
2778 Female, age 91, both hemispheres 52.5
2037 Male, age 80, right hemisphere 50.6
2111 Female, age 85, right hemisphere 48.3
1818 Male, age 74, unknown 47.2
2566 Female, age 72, unknown 46.7
Nucleus accumbens
nTPM: 46.7
2391 Female, age 94, left hemisphere 47.8
1806 Female, age 85, left hemisphere 46.9
1856 Female, age 91, right hemisphere 46.9
2698 Female, age 72, unknown 46.7
1783 Male, age 74, unknown 46.6
2286 Male, age 75, left hemisphere 46.3
2732 Male, age 80, right hemisphere 46.3
2824 Male, age 61, right hemisphere 46.3
Nucleus basalis of Meynert
nTPM: 47.1
2569 Male, age 61, both hemispheres 48.8
2821 Male, age 75, both hemispheres 46.9
2393 Male, age 80, right hemisphere 46.3
2484 Female, age 94, left hemisphere 46.3
Nucleus of the diagonal band
nTPM: 46.3
1979 Male, age 74, unknown 46.4
1812 Female, age 91, both hemispheres 46.3
2029 Male, age 61, right hemisphere 46.3
2195 Female, age 85, both hemispheres 46.3
2775 Male, age 80, right hemisphere 46.3
Olfactory tubercle
nTPM: 46.3
1998 Female, age 91, both hemispheres 46.4
1846 Male, age 80, right hemisphere 46.3
2487 Female, age 94, left hemisphere 46.3
2856 Male, age 75, right hemisphere 46.3
Putamen
nTPM: 47.1
2482 Female, age 94, left hemisphere 50.4
2466 Female, age 79, unknown 47.0
2489 Female, age 72, unknown 46.7
1829 Male, age 74, unknown 46.4
1838 Male, age 80, right hemisphere 46.3
1937 Female, age 91, right hemisphere 46.3
2647 Male, age 75, left hemisphere 46.3
Septal nuclei
nTPM: 46.4
2031 Female, age 72, unknown 46.7
1960 Male, age 74, unknown 46.4
2009 Female, age 91, both hemispheres 46.3
2059 Female, age 85, both hemispheres 46.3
2199 Male, age 80, right hemisphere 46.3
2394 Male, age 61, left hemisphere 46.3
2629 Female, age 94, right hemisphere 46.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 17.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.1
Samples: 246

Max nTPM: 48.9
Min nTPM: 0.0
Std nTPM: 7.7
Median nTPM: 12.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 48.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 40.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 40.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 38.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 38.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 37.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 32.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 32.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 31.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 31.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 30.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.2
Samples: 246

Max nTPM: 73.8
Min nTPM: 0.0
Std nTPM: 10.8
Median nTPM: 12.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 73.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 66.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 61.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 52.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 51.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 50.2
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 47.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 45.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 44.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 40.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 39.2
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Brain - Putamen (basal ganglia)
Average nTPM: 17.3
Samples: 205

Max nTPM: 47.9
Min nTPM: 0.0
Std nTPM: 8.5
Median nTPM: 16.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 47.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 41.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 41.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 40.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 40.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 39.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 39.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 37.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 37.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 35.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 34.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.3
FF:10037-101F1 23-56 years, mixed 0.3
Putamen
Scaled Tags Per Million: 0.4
FF:10176-103C5 60 years, female 0.4

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The Human Protein Atlas

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