BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:8.0 nTPM
HPA:8.0 nTPM
GTEx:24.2 nTPM
FANTOM5:93.3 Scaled Tags Per Million
Pig:11.2 nTPM
Mouse:42.2 nTPM
Allen mouse:1.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA029467
Glial cells Not detected
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 8.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.6
2289 Male, age 61, right hemisphere 14.9
2288 Male, age 75, left hemisphere 12.5
1854 Male, age 80, left hemisphere 7.8
1857 Female, age 85, left hemisphere 6.6
1781 Male, age 74, unknown 5.4
2846 Female, age 79, unknown 5.2
2290 Female, age 72, unknown 4.6
2481 Female, age 94, left hemisphere 3.6
Claustrum
nTPM: 6.1
2491 Male, age 75, both hemispheres 11.0
2568 Male, age 61, both hemispheres 10.1
2284 Female, age 91, both hemispheres 10.0
2392 Female, age 94, both hemispheres 6.6
1956 Male, age 74, unknown 5.1
2645 Female, age 72, unknown 4.3
2198 Male, age 80, both hemispheres 3.4
2292 Female, age 85, both hemispheres 2.5
2196 Female, age 79, unknown 1.6
Globus pallidus, externus
nTPM: 7.5
2772 Female, age 79, unknown 11.2
2567 Female, age 72, unknown 8.7
1996 Male, age 80, right hemisphere 6.0
2646 Male, age 61, right hemisphere 6.0
2395 Male, age 75, both hemispheres 5.5
Globus pallidus, internus
nTPM: 5.4
2778 Female, age 91, both hemispheres 10.2
2566 Female, age 72, unknown 9.3
2483 Female, age 94, right hemisphere 9.0
2037 Male, age 80, right hemisphere 3.2
2287 Male, age 75, right hemisphere 2.8
2111 Female, age 85, right hemisphere 2.3
1818 Male, age 74, unknown 1.3
Nucleus accumbens
nTPM: 5.7
2286 Male, age 75, left hemisphere 8.9
2824 Male, age 61, right hemisphere 8.9
1856 Female, age 91, right hemisphere 8.7
1806 Female, age 85, left hemisphere 6.9
1783 Male, age 74, unknown 4.1
2391 Female, age 94, left hemisphere 3.6
2698 Female, age 72, unknown 3.0
2732 Male, age 80, right hemisphere 1.7
Nucleus basalis of Meynert
nTPM: 7.6
2484 Female, age 94, left hemisphere 11.3
2569 Male, age 61, both hemispheres 9.9
2821 Male, age 75, both hemispheres 5.5
2393 Male, age 80, right hemisphere 3.8
Nucleus of the diagonal band
nTPM: 4.7
1979 Male, age 74, unknown 8.6
2775 Male, age 80, right hemisphere 6.0
2195 Female, age 85, both hemispheres 3.6
1812 Female, age 91, both hemispheres 3.0
2029 Male, age 61, right hemisphere 2.3
Olfactory tubercle
nTPM: 4.4
2487 Female, age 94, left hemisphere 5.7
1998 Female, age 91, both hemispheres 5.2
2856 Male, age 75, right hemisphere 3.7
1846 Male, age 80, right hemisphere 3.1
Putamen
nTPM: 6.5
1937 Female, age 91, right hemisphere 10.3
2466 Female, age 79, unknown 9.4
2482 Female, age 94, left hemisphere 8.2
2647 Male, age 75, left hemisphere 8.2
2489 Female, age 72, unknown 5.5
1829 Male, age 74, unknown 3.5
1838 Male, age 80, right hemisphere 0.7
Septal nuclei
nTPM: 8.0
2059 Female, age 85, both hemispheres 14.7
1960 Male, age 74, unknown 12.5
2031 Female, age 72, unknown 9.9
2009 Female, age 91, both hemispheres 6.7
2629 Female, age 94, right hemisphere 6.6
2199 Male, age 80, right hemisphere 3.7
2394 Male, age 61, left hemisphere 2.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.8
Samples: 246

Max nTPM: 41.7
Min nTPM: 7.4
Std nTPM: 5.0
Median nTPM: 19.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 41.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 40.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 36.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 33.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 33.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 32.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 31.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 31.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 30.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 29.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 29.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.9
Samples: 246

Max nTPM: 44.7
Min nTPM: 6.0
Std nTPM: 5.1
Median nTPM: 16.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 44.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 41.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 37.4
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 34.5
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 31.4
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 29.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 28.9
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 27.6
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 26.7
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 26.2
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 25.9
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Brain - Putamen (basal ganglia)
Average nTPM: 24.2
Samples: 205

Max nTPM: 48.3
Min nTPM: 10.4
Std nTPM: 6.2
Median nTPM: 23.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 48.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 43.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 42.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 41.6
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 37.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 36.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 36.2
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 35.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 35.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 34.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 34.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 60.8
FF:10164-103B2 76 years, female 60.8
Globus pallidus
Scaled Tags Per Million: 93.3
FF:10161-103A8 76 years, female 102.9
FF:10175-103C4 60 years, female 83.6
Nucleus accumbens
Scaled Tags Per Million: 73.2
FF:10037-101F1 23-56 years, mixed 73.2
Putamen
Scaled Tags Per Million: 63.2
FF:10176-103C5 60 years, female 63.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.2
Pig sample Sample description nTPM
Caudate
nTPM: 8.2
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.6
Sample A Female 7.6
Sample B Female 7.6
Sample C Male 9.4
Sample D Male 8.1
Putamen
nTPM: 11.2
Samples: 4

Max nTPM: 13.3
Min nTPM: 8.3
Sample A Female 13.3
Sample B Female 8.3
Sample C Male 12.9
Sample D Male 10.2
Septum
nTPM: 10.8
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.1
Sample A Female 9.6
Sample B Female 9.1
Sample C Male 11.8
Sample D Male 12.6
Ventral pallidum
nTPM: 10.2
Samples: 4

Max nTPM: 14.2
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 9.8
Sample C Male 14.2
Sample D Male 8.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 42.2
Samples: 4

Max nTPM: 42.8
Min nTPM: 40.8
Sample A Male 40.8
Sample B Male 42.7
Sample C Female 42.8
Sample D Female 42.6
Septum
nTPM: 23.7
Samples: 4

Max nTPM: 28.9
Min nTPM: 20.6
Sample A Male 20.6
Sample B Male 22.1
Sample C Female 23.1
Sample D Female 28.9
Ventral forebrain
nTPM: 26.9
Samples: 4

Max nTPM: 28.0
Min nTPM: 24.9
Sample A Male 27.7
Sample B Male 27.0
Sample C Female 24.9
Sample D Female 28.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
74658077 Antisense, RP_060220_04_D02, Mouse strain C57BL/6J (56 days, male) 1.4
69671792 Antisense, RP_050428_02_D03, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 0.3
74658077 Antisense, RP_060220_04_D02, Mouse strain C57BL/6J (56 days, male) 0.3
69671792 Antisense, RP_050428_02_D03, Mouse strain C57BL/6J (56 days, male) 0.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
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