BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.7 nTPM
HPA:5.7 nTPM
GTEx:5.5 nTPM
FANTOM5:17.5 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:38.8 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.0
2289 Male, age 61, right hemisphere 5.4
1857 Female, age 85, left hemisphere 5.1
1854 Male, age 80, left hemisphere 5.0
2846 Female, age 79, unknown 5.0
2288 Male, age 75, left hemisphere 4.9
2481 Female, age 94, left hemisphere 4.9
2290 Female, age 72, unknown 4.8
1781 Male, age 74, unknown 4.7
Claustrum
nTPM: 4.9
2196 Female, age 79, unknown 5.3
2392 Female, age 94, both hemispheres 5.3
2292 Female, age 85, both hemispheres 5.1
2491 Male, age 75, both hemispheres 5.0
2568 Male, age 61, both hemispheres 4.9
1956 Male, age 74, unknown 4.8
2284 Female, age 91, both hemispheres 4.7
2645 Female, age 72, unknown 4.7
2198 Male, age 80, both hemispheres 4.6
Globus pallidus, externus
nTPM: 5.4
1996 Male, age 80, right hemisphere 6.1
2772 Female, age 79, unknown 5.6
2646 Male, age 61, right hemisphere 5.5
2395 Male, age 75, both hemispheres 5.2
2567 Female, age 72, unknown 4.8
Globus pallidus, internus
nTPM: 5.5
2778 Female, age 91, both hemispheres 6.4
1818 Male, age 74, unknown 6.1
2037 Male, age 80, right hemisphere 5.9
2111 Female, age 85, right hemisphere 5.3
2287 Male, age 75, right hemisphere 5.1
2483 Female, age 94, right hemisphere 5.1
2566 Female, age 72, unknown 4.6
Nucleus accumbens
nTPM: 5.3
2732 Male, age 80, right hemisphere 6.2
2286 Male, age 75, left hemisphere 5.5
2824 Male, age 61, right hemisphere 5.3
2698 Female, age 72, unknown 5.2
1806 Female, age 85, left hemisphere 5.1
2391 Female, age 94, left hemisphere 5.1
1856 Female, age 91, right hemisphere 5.0
1783 Male, age 74, unknown 4.7
Nucleus basalis of Meynert
nTPM: 5.4
2569 Male, age 61, both hemispheres 5.9
2821 Male, age 75, both hemispheres 5.4
2393 Male, age 80, right hemisphere 5.3
2484 Female, age 94, left hemisphere 5.0
Nucleus of the diagonal band
nTPM: 5.4
1812 Female, age 91, both hemispheres 6.4
1979 Male, age 74, unknown 6.2
2775 Male, age 80, right hemisphere 5.0
2195 Female, age 85, both hemispheres 4.9
2029 Male, age 61, right hemisphere 4.7
Olfactory tubercle
nTPM: 5.2
1846 Male, age 80, right hemisphere 5.8
2856 Male, age 75, right hemisphere 5.2
2487 Female, age 94, left hemisphere 5.1
1998 Female, age 91, both hemispheres 4.6
Putamen
nTPM: 4.8
1829 Male, age 74, unknown 5.1
2482 Female, age 94, left hemisphere 5.1
1937 Female, age 91, right hemisphere 5.0
2466 Female, age 79, unknown 4.8
2489 Female, age 72, unknown 4.8
1838 Male, age 80, right hemisphere 4.6
2647 Male, age 75, left hemisphere 4.4
Septal nuclei
nTPM: 5.7
2199 Male, age 80, right hemisphere 6.8
2629 Female, age 94, right hemisphere 6.2
2009 Female, age 91, both hemispheres 6.0
2059 Female, age 85, both hemispheres 5.5
2394 Male, age 61, left hemisphere 5.3
2031 Female, age 72, unknown 5.1
1960 Male, age 74, unknown 4.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 5.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.0
Samples: 246

Max nTPM: 24.5
Min nTPM: 0.8
Std nTPM: 2.9
Median nTPM: 4.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 24.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 16.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 14.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 14.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 14.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 13.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 12.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 11.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 11.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 10.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 10.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.5
Samples: 246

Max nTPM: 22.1
Min nTPM: 0.6
Std nTPM: 3.3
Median nTPM: 4.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 22.1
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 17.1
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 16.2
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 16.2
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 16.1
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 15.9
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 15.5
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 15.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 14.3
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 14.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 13.5
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Brain - Putamen (basal ganglia)
Average nTPM: 4.7
Samples: 205

Max nTPM: 15.7
Min nTPM: 0.9
Std nTPM: 2.3
Median nTPM: 4.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 15.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 13.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 13.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 12.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 12.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 10.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 10.0
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 9.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 8.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 8.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 8.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 17.5
FF:10164-103B2 76 years, female 17.5
Globus pallidus
Scaled Tags Per Million: 11.9
FF:10161-103A8 76 years, female 12.8
FF:10175-103C4 60 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 9.8
FF:10037-101F1 23-56 years, mixed 9.8
Putamen
Scaled Tags Per Million: 6.7
FF:10176-103C5 60 years, female 6.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.3
Pig sample Sample description nTPM
Caudate
nTPM: 17.4
Samples: 4

Max nTPM: 18.7
Min nTPM: 15.9
Sample A Female 18.7
Sample B Female 17.4
Sample C Male 17.4
Sample D Male 15.9
Putamen
nTPM: 9.0
Samples: 4

Max nTPM: 11.1
Min nTPM: 7.2
Sample A Female 11.1
Sample B Female 8.3
Sample C Male 7.2
Sample D Male 9.3
Septum
nTPM: 21.3
Samples: 4

Max nTPM: 31.4
Min nTPM: 15.1
Sample A Female 15.1
Sample B Female 17.2
Sample C Male 21.4
Sample D Male 31.4
Ventral pallidum
nTPM: 13.3
Samples: 4

Max nTPM: 16.2
Min nTPM: 10.1
Sample A Female 10.1
Sample B Female 16.2
Sample C Male 12.0
Sample D Male 15.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 38.9
Samples: 4

Max nTPM: 43.4
Min nTPM: 32.3
Sample A Male 32.3
Sample B Male 40.0
Sample C Female 39.7
Sample D Female 43.4
Septum
nTPM: 35.5
Samples: 4

Max nTPM: 40.6
Min nTPM: 29.9
Sample A Male 29.9
Sample B Male 40.6
Sample C Female 36.3
Sample D Female 35.0
Ventral forebrain
nTPM: 31.8
Samples: 4

Max nTPM: 40.8
Min nTPM: 28.4
Sample A Male 29.1
Sample B Male 28.9
Sample C Female 40.8
Sample D Female 28.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
68300938 Antisense, RP_041129_02_D11, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
68300938 Antisense, RP_041129_02_D11, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

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