BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:35.9 nTPM
HPA:35.9 nTPM
GTEx:24.1 nTPM
FANTOM5:14.3 Scaled Tags Per Million
Mouse:12.2 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.8
2481 Female, age 94, left hemisphere 37.6
1857 Female, age 85, left hemisphere 36.5
1854 Male, age 80, left hemisphere 36.4
2846 Female, age 79, unknown 36.2
2289 Male, age 61, right hemisphere 35.7
1781 Male, age 74, unknown 35.2
2288 Male, age 75, left hemisphere 35.1
2290 Female, age 72, unknown 34.1
Claustrum
nTPM: 35.0
2568 Male, age 61, both hemispheres 36.7
2198 Male, age 80, both hemispheres 35.7
2491 Male, age 75, both hemispheres 35.5
2292 Female, age 85, both hemispheres 35.0
2284 Female, age 91, both hemispheres 34.8
2196 Female, age 79, unknown 34.7
1956 Male, age 74, unknown 34.6
2392 Female, age 94, both hemispheres 34.2
2645 Female, age 72, unknown 34.1
Globus pallidus, externus
nTPM: 35.9
2646 Male, age 61, right hemisphere 36.9
2772 Female, age 79, unknown 36.6
1996 Male, age 80, right hemisphere 36.4
2395 Male, age 75, both hemispheres 35.7
2567 Female, age 72, unknown 34.0
Globus pallidus, internus
nTPM: 35.4
2483 Female, age 94, right hemisphere 37.2
2778 Female, age 91, both hemispheres 36.2
2287 Male, age 75, right hemisphere 36.0
1818 Male, age 74, unknown 35.8
2037 Male, age 80, right hemisphere 34.8
2566 Female, age 72, unknown 34.2
2111 Female, age 85, right hemisphere 33.8
Nucleus accumbens
nTPM: 35.7
1856 Female, age 91, right hemisphere 38.3
1806 Female, age 85, left hemisphere 36.5
2286 Male, age 75, left hemisphere 35.7
1783 Male, age 74, unknown 35.6
2391 Female, age 94, left hemisphere 35.6
2698 Female, age 72, unknown 35.6
2824 Male, age 61, right hemisphere 34.8
2732 Male, age 80, right hemisphere 33.9
Nucleus basalis of Meynert
nTPM: 35.5
2569 Male, age 61, both hemispheres 36.9
2484 Female, age 94, left hemisphere 35.9
2821 Male, age 75, both hemispheres 34.7
2393 Male, age 80, right hemisphere 34.5
Nucleus of the diagonal band
nTPM: 35.5
1812 Female, age 91, both hemispheres 36.8
2029 Male, age 61, right hemisphere 35.9
2775 Male, age 80, right hemisphere 35.2
2195 Female, age 85, both hemispheres 34.9
1979 Male, age 74, unknown 34.4
Olfactory tubercle
nTPM: 35.4
1846 Male, age 80, right hemisphere 37.4
2856 Male, age 75, right hemisphere 35.4
1998 Female, age 91, both hemispheres 35.0
2487 Female, age 94, left hemisphere 33.9
Putamen
nTPM: 35.9
2482 Female, age 94, left hemisphere 36.9
1838 Male, age 80, right hemisphere 36.6
2647 Male, age 75, left hemisphere 36.6
1937 Female, age 91, right hemisphere 36.4
1829 Male, age 74, unknown 35.2
2466 Female, age 79, unknown 34.7
2489 Female, age 72, unknown 34.7
Septal nuclei
nTPM: 34.4
2031 Female, age 72, unknown 35.7
1960 Male, age 74, unknown 34.5
2199 Male, age 80, right hemisphere 34.4
2009 Female, age 91, both hemispheres 34.3
2059 Female, age 85, both hemispheres 34.3
2629 Female, age 94, right hemisphere 34.0
2394 Male, age 61, left hemisphere 33.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.7
Samples: 246

Max nTPM: 48.7
Min nTPM: 9.0
Std nTPM: 6.5
Median nTPM: 20.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 48.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 45.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 40.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 40.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 38.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 37.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 37.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 37.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 36.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 35.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 35.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.2
Samples: 246

Max nTPM: 73.0
Min nTPM: 5.6
Std nTPM: 9.5
Median nTPM: 21.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 73.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 53.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 50.9
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 49.3
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 48.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 46.3
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 44.8
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 44.0
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 43.4
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 42.8
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 42.2
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Brain - Putamen (basal ganglia)
Average nTPM: 24.1
Samples: 205

Max nTPM: 50.5
Min nTPM: 6.7
Std nTPM: 6.9
Median nTPM: 23.8
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 50.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 44.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 43.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 42.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 41.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 40.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 36.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 36.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 36.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 35.9
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 34.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 14.3
FF:10164-103B2 76 years, female 14.3
Globus pallidus
Scaled Tags Per Million: 11.0
FF:10175-103C4 60 years, female 11.8
FF:10161-103A8 76 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 12.0
FF:10037-101F1 23-56 years, mixed 12.0
Putamen
Scaled Tags Per Million: 9.7
FF:10176-103C5 60 years, female 9.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.3
Samples: 4

Max nTPM: 12.9
Min nTPM: 11.8
Sample A Male 11.9
Sample B Male 12.9
Sample C Female 11.8
Sample D Female 12.4
Septum
nTPM: 9.6
Samples: 4

Max nTPM: 9.9
Min nTPM: 9.4
Sample A Male 9.4
Sample B Male 9.5
Sample C Female 9.5
Sample D Female 9.9
Ventral forebrain
nTPM: 10.6
Samples: 4

Max nTPM: 11.7
Min nTPM: 10.0
Sample A Male 10.3
Sample B Male 10.3
Sample C Female 10.0
Sample D Female 11.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71210753 Antisense, RP_050810_04_E04, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71210753 Antisense, RP_050810_04_E04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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