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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:542.3 nTPM
GTEx:542.3 nTPM
FANTOM5:567.5 Scaled Tags Per Million
Pig:562.0 nTPM
Mouse:2414.4 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA041301
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Low
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA044239
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 542.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 542.3
Samples: 105

Max nTPM: 1502.2
Min nTPM: 79.3
Std nTPM: 309.6
Median nTPM:
218_1 71 years, female 1502.2
352_1 62 years, male 1378.2
350_1 84 years, female 1345.6
353_1 82 years, female 1310.9
319_1 81 years, male 1270.8
322_1 76 years, male 1199.3
172_1 72 years, female 1091.4
321_1 62 years, female 1089.4
386_1 76 years, male 1072.8
356_1 87 years, female 1013.4
293_1 68 years, female 1010.5
163_1 78 years, male 959.0
320_1 89 years, female 925.6
354_1 81 years, female 872.9
355_1 70 years, female 858.2
237_1 82 years, male 843.9
6_1 73 years, female 843.6
335_1 73 years, female 822.0
251_1 78 years, male 804.1
286_1 68 years, female 801.8
318_1 68 years, male 790.3
447_1 81 years, male 770.9
243_1 75 years, male 767.0
376_1 75 years, female 761.6
377_1 82 years, female 754.9
292_1 71 years, male 737.2
348_1 84 years, male 734.2
177_1 74 years, male 728.8
405_1 91 years, male 721.9
349_1 83 years, male 716.8
316_1 62 years, male 691.8
425_1 59 years, female 663.1
351_1 91 years, male 652.7
406_1 79 years, male 640.2
311_1 78 years, male 617.0
480_1 63 years, male 600.3
503_1 68 years, male 576.5
229_1 69 years, female 567.1
389_1 86 years, female 554.6
526_1 61 years, male 543.8
384_1 83 years, male 538.0
189_1 76 years, male 531.7
291_1 76 years, male 523.6
375_1 74 years, female 516.1
396_1 62 years, male 505.3
35_1 74 years, female 487.8
246_1 77 years, male 484.8
518_1 75 years, female 480.8
404_1 82 years, female 474.1
153_1 70 years, female 473.6
347_1 72 years, male 473.3
506_1 65 years, male 465.7
99_1 64 years, male 464.6
173_1 67 years, male 464.5
517_1 88 years, male 463.1
317_1 60 years, male 450.2
324_1 76 years, male 443.7
264_1 73 years, female 438.7
379_1 60 years, male 437.8
394_1 75 years, female 436.6
9_1 66 years, female 426.8
468_1 89 years, male 424.5
145_1 84 years, male 413.7
217_1 76 years, male 407.3
2_1 77 years, female 404.3
266_1 85 years, male 403.2
115_1 83 years, male 401.7
495_1 57 years, female 388.4
4_1 88 years, female 383.6
126_1 63 years, male 382.7
265_1 87 years, male 373.9
254_1 77 years, female 354.6
307_1 66 years, female 351.0
117_1 61 years, male 346.6
499_1 55 years, female 341.5
18_1 88 years, male 335.9
295_1 61 years, female 332.3
17_1 71 years, male 325.5
315_1 62 years, female 321.2
139_1 64 years, female 316.4
452_1 88 years, female 313.9
43_1 64 years, female 306.5
81_1 67 years, male 303.8
137_1 83 years, male 299.6
313_1 79 years, female 286.2
120_1 70 years, female 273.1
415_1 77 years, female 250.8
466_1 57 years, female 247.7
109_1 81 years, female 235.6
142_1 61 years, female 235.6
162_1 79 years, female 229.9
32_1 67 years, male 225.0
288_1 66 years, female 217.8
41_1 94 years, female 215.8
119_1 70 years, female 203.2
42_1 85 years, male 192.5
308_1 70 years, female 182.6
149_1 88 years, male 176.6
89_1 63 years, male 174.9
414_1 84 years, female 171.3
490_1 67 years, female 149.8
314_1 67 years, male 145.8
501_1 88 years, male 119.2
491_1 89 years, female 112.4
413_1 59 years, female 79.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 567.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 567.5
FF:10030-101E3 24-65 years, mixed 567.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 562.0
Pig sample Sample description nTPM
Retina
nTPM: 562.0
Samples: 4

Max nTPM: 655.3
Min nTPM: 457.9
Sample A Female 655.3
Sample B Female 525.3
Sample C Male 609.4
Sample D Male 457.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2414.4
Mouse sample Sample description nTPM
Retina
nTPM: 2414.3
Samples: 4

Max nTPM: 2591.3
Min nTPM: 2144.0
Sample A Male 2586.4
Sample B Male 2144.0
Sample C Female 2591.3
Sample D Female 2335.6

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