MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:144.9 nTPM
HPA:144.9 nTPM
GTEx:103.3 nTPM
FANTOM5:268.6 Scaled Tags Per Million
Pig:146.9 nTPM
Mouse:22.4 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 144.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 124.9
1870 Female, age 42, unknown 150.1
1830 Male, age 51, unknown 141.2
2828 Female, age 72, unknown 137.1
2411 Female, age 72, unknown 129.9
1833 Male, age 53, unknown 126.1
2219 Male, age 76, both hemispheres 121.8
2019 Male, age 18, unknown 120.9
1827 Male, age 72, unknown 115.5
2666 Male, age 74, left hemisphere 113.1
2586 Male, age 75, left hemisphere 93.6
Dorsal raphe nucleus
nTPM: 121.5
2016 Female, age 72, unknown 156.7
2298 Female, age 72, unknown 128.8
1828 Male, age 53, unknown 116.4
2750 Male, age 76, both hemispheres 114.4
2047 Male, age 72, unknown 91.4
Inferior colliculus
nTPM: 108.2
1890 Male, age 53, unknown 113.7
1848 Female, age 42, unknown 111.4
2849 Male, age 72, unknown 106.2
2097 Female, age 72, unknown 101.6
Median raphe nucleus
nTPM: 95.7
2220 Male, age 76, midline 95.7
Pedunculopontine tegmental nucleus
nTPM: 144.9
2338 Male, age 61, both hemispheres 219.2
2334 Male, age 80, both hemispheres 112.5
1921 Female, age 85, both hemispheres 103.1
Periaquaductal grey, anterior
nTPM: 110.3
1947 Male, age 18, unknown 120.1
1795 Male, age 51, unknown 108.1
2502 Female, age 75, unknown 102.7
Periaquaductal grey, dorsal
nTPM: 120.1
1831 Male, age 72, unknown 137.8
2464 Female, age 72, unknown 119.7
2850 Male, age 76, both hemispheres 118.9
1840 Male, age 53, unknown 104.1
Periaquaductal grey, lateral
nTPM: 124.0
2140 Male, age 76, both hemispheres 129.4
2272 Male, age 74, both hemispheres 124.2
2053 Male, age 18, unknown 118.5
Pretectal area
nTPM: 114.5
2316 Male, age 76, right hemisphere 141.3
2273 Male, age 74, both hemispheres 132.0
1815 Male, age 53, unknown 125.7
2224 Female, age 72, unknown 121.0
2667 Female, age 75, unknown 118.5
2825 Male, age 18, unknown 114.4
2407 Male, age 75, both hemispheres 112.0
1817 Female, age 42, unknown 105.5
2007 Male, age 72, unknown 98.9
1944 Female, age 72, unknown 96.2
1816 Male, age 51, unknown 93.7
Red nucleus
nTPM: 127.0
1865 Male, age 51, unknown 137.5
2227 Male, age 72, unknown 133.7
2769 Male, age 72, unknown 133.2
2785 Male, age 18, unknown 133.1
1904 Male, age 53, unknown 131.4
1954 Female, age 42, unknown 131.3
2503 Female, age 72, unknown 130.7
2823 Male, age 76, right hemisphere 125.6
2725 Female, age 75, unknown 125.1
1821 Female, age 72, unknown 119.3
2584 Male, age 75, left hemisphere 116.0
2588 Male, age 74, left hemisphere 107.5
Substantia nigra
nTPM: 122.3
2699 Male, age 18, unknown 145.3
2409 Female, age 72, unknown 139.1
1851 Male, age 51, unknown 131.4
2590 Female, age 75, unknown 129.5
2583 Male, age 75, right hemisphere 128.3
2665 Male, age 74, both hemispheres 126.9
2241 Male, age 72, unknown 118.8
1941 Male, age 53, unknown 106.4
1889 Female, age 72, unknown 101.7
1916 Female, age 42, unknown 95.9
Superior colliculus
nTPM: 128.7
1995 Male, age 72, unknown 180.2
1913 Female, age 42, unknown 178.4
1895 Male, age 76, right hemisphere 126.9
1839 Male, age 51, unknown 126.6
2587 Male, age 74, left hemisphere 122.3
2668 Female, age 75, unknown 119.4
1796 Male, age 53, unknown 117.1
2087 Female, age 72, unknown 113.1
2664 Male, age 75, both hemispheres 105.9
2261 Male, age 18, unknown 97.2
Ventral tegmental area
nTPM: 124.7
2021 Male, age 53, unknown 140.3
2410 Female, age 72, unknown 139.0
2218 Male, age 76, both hemispheres 118.3
2223 Female, age 72, unknown 118.2
1915 Female, age 42, unknown 116.3
1942 Male, age 51, unknown 115.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 103.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.3
Samples: 139

Max nTPM: 364.1
Min nTPM: 33.7
Std nTPM: 52.2
Median nTPM: 91.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 364.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 263.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 251.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 244.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 211.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 210.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 198.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 193.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 192.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 181.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 179.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 268.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 268.6
FF:10158-103A5 76 years, female 268.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 146.9
Pig sample Sample description nTPM
Midbrain
nTPM: 50.8
Samples: 4

Max nTPM: 80.0
Min nTPM: 29.8
Sample A Female 80.0
Sample B Female 53.9
Sample C Male 39.5
Sample D Male 29.8
Periaqueductal gray
nTPM: 57.2
Samples: 3

Max nTPM: 62.9
Min nTPM: 48.6
Sample B Female 60.0
Sample C Male 62.9
Sample D Male 48.6
Substantia nigra
nTPM: 88.3
Samples: 4

Max nTPM: 165.3
Min nTPM: 51.8
Sample A Female 63.1
Sample B Female 165.3
Sample C Male 51.8
Sample D Male 73.1
Superior colliculi
nTPM: 146.9
Samples: 4

Max nTPM: 374.3
Min nTPM: 42.9
Sample A Female 123.2
Sample B Female 374.3
Sample C Male 42.9
Sample D Male 47.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.4
Samples: 4

Max nTPM: 25.9
Min nTPM: 19.4
Sample A Male 19.4
Sample B Male 21.3
Sample C Female 23.1
Sample D Female 25.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68302041 Antisense, RP_041130_02_C08, Mouse strain C57BL/6J (56 days, male) 0.5
1085 Antisense, RP_Baylor_103215, Mouse strain C57BL/6J (56 days, male) 0.1
1084 Antisense, RP_Baylor_103215, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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