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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:810.7 nTPM
HPA:382.8 nTPM
GTEx:810.7 nTPM
FANTOM5:1090.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA031085Antibody HPA053694
Glandular cells Not detectedMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 382.8
overview
Male, age 65
Small intestine sample 232
nTPM: 332
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 447.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 459.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 292.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 810.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 810.7
Samples: 187

Max nTPM: 2072.7
Min nTPM: 254.4
Std nTPM: 369.6
Median nTPM: 715.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2072.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1884.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1869.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1762.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1601.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1595.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1587.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1562.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1560.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1546.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1522.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1484.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1436.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1390.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1389.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1374.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 1373.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1367.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1361.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1348.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1334.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1281.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1272.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1269.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1268.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1263.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1260.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1243.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1237.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1228.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1202.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1196.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1194.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1183.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1174.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1170.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1158.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1152.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1147.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1144.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1127.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1118.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1106.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1076.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1069.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1065.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1058.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1050.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1017.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1012.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 986.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 986.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 983.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 973.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 972.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 969.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 960.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 956.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 938.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 923.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 906.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 897.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 895.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 893.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 889.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 884.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 883.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 871.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 866.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 864.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 860.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 845.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 844.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 841.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 836.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 831.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 824.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 822.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 815.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 811.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 799.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 779.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 776.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 765.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 761.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 752.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 752.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 750.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 740.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 730.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 728.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 724.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 716.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 715.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 713.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 708.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 707.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 698.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 692.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 689.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 689.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 677.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 670.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 665.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 664.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 661.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 647.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 646.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 643.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 637.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 637.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 636.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 633.0
GTEX-1192X-2526-SM-59868 50-59 years, male 630.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 627.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 616.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 598.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 595.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 588.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 584.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 582.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 579.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 579.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 576.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 576.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 574.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 567.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 563.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 556.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 556.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 555.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 554.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 550.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 546.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 545.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 543.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 540.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 540.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 539.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 538.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 538.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 529.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 527.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 525.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 521.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 517.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 516.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 513.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 510.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 503.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 496.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 487.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 483.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 471.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 468.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 467.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 463.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 460.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 459.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 453.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 453.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 448.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 445.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 436.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 432.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 426.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 419.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 408.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 408.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 407.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 400.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 397.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 394.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 383.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 380.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 375.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 370.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 365.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 365.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 322.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 319.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 312.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 284.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 280.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 277.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 272.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 254.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1090.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1090.1
FF:10024-101D6 15,40,85 years, mixed 1090.1

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