MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:92.7 nTPM
HPA:92.7 nTPM
GTEx:76.3 nTPM
FANTOM5:66.7 Scaled Tags Per Million
Pig:61.7 nTPM
Mouse:177.2 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.6
1827 Male, age 72, unknown 92.6
2019 Male, age 18, unknown 91.1
2411 Female, age 72, unknown 89.4
1870 Female, age 42, unknown 88.3
1833 Male, age 53, unknown 88.1
2828 Female, age 72, unknown 87.0
2666 Male, age 74, left hemisphere 86.0
1830 Male, age 51, unknown 85.8
2219 Male, age 76, both hemispheres 85.8
2586 Male, age 75, left hemisphere 82.2
Dorsal raphe nucleus
nTPM: 89.0
1828 Male, age 53, unknown 91.6
2298 Female, age 72, unknown 90.4
2047 Male, age 72, unknown 88.9
2750 Male, age 76, both hemispheres 87.1
2016 Female, age 72, unknown 86.8
Inferior colliculus
nTPM: 89.8
1848 Female, age 42, unknown 90.6
2097 Female, age 72, unknown 90.3
2849 Male, age 72, unknown 90.0
1890 Male, age 53, unknown 88.4
Median raphe nucleus
nTPM: 90.2
2220 Male, age 76, midline 90.2
Pedunculopontine tegmental nucleus
nTPM: 90.4
2334 Male, age 80, both hemispheres 91.3
1921 Female, age 85, both hemispheres 91.2
2338 Male, age 61, both hemispheres 88.5
Periaquaductal grey, anterior
nTPM: 89.9
1947 Male, age 18, unknown 91.0
1795 Male, age 51, unknown 90.7
2502 Female, age 75, unknown 87.9
Periaquaductal grey, dorsal
nTPM: 88.6
2850 Male, age 76, both hemispheres 91.0
1840 Male, age 53, unknown 88.4
1831 Male, age 72, unknown 87.8
2464 Female, age 72, unknown 87.2
Periaquaductal grey, lateral
nTPM: 90.3
2272 Male, age 74, both hemispheres 94.1
2053 Male, age 18, unknown 88.8
2140 Male, age 76, both hemispheres 87.9
Pretectal area
nTPM: 92.7
1816 Male, age 51, unknown 97.7
1817 Female, age 42, unknown 97.6
2007 Male, age 72, unknown 96.6
1944 Female, age 72, unknown 94.9
2667 Female, age 75, unknown 94.0
1815 Male, age 53, unknown 92.7
2273 Male, age 74, both hemispheres 92.3
2224 Female, age 72, unknown 89.9
2407 Male, age 75, both hemispheres 88.7
2825 Male, age 18, unknown 88.4
2316 Male, age 76, right hemisphere 87.3
Red nucleus
nTPM: 88.0
1821 Female, age 72, unknown 91.0
2725 Female, age 75, unknown 90.9
2785 Male, age 18, unknown 90.4
2588 Male, age 74, left hemisphere 88.5
1954 Female, age 42, unknown 88.3
2503 Female, age 72, unknown 87.8
2584 Male, age 75, left hemisphere 87.5
2823 Male, age 76, right hemisphere 87.5
2769 Male, age 72, unknown 87.2
2227 Male, age 72, unknown 86.8
1865 Male, age 51, unknown 86.0
1904 Male, age 53, unknown 84.7
Substantia nigra
nTPM: 89.2
1889 Female, age 72, unknown 93.1
2409 Female, age 72, unknown 92.2
1941 Male, age 53, unknown 91.8
1916 Female, age 42, unknown 91.2
2665 Male, age 74, both hemispheres 89.8
1851 Male, age 51, unknown 89.0
2590 Female, age 75, unknown 87.8
2241 Male, age 72, unknown 87.3
2699 Male, age 18, unknown 85.9
2583 Male, age 75, right hemisphere 83.7
Superior colliculus
nTPM: 88.9
2087 Female, age 72, unknown 92.2
1895 Male, age 76, right hemisphere 91.2
2261 Male, age 18, unknown 90.2
2587 Male, age 74, left hemisphere 89.6
1839 Male, age 51, unknown 89.5
1796 Male, age 53, unknown 89.0
2664 Male, age 75, both hemispheres 88.4
2668 Female, age 75, unknown 87.9
1913 Female, age 42, unknown 86.0
1995 Male, age 72, unknown 85.3
Ventral tegmental area
nTPM: 87.6
2410 Female, age 72, unknown 89.1
2218 Male, age 76, both hemispheres 89.0
1915 Female, age 42, unknown 88.2
2021 Male, age 53, unknown 86.6
2223 Female, age 72, unknown 86.3
1942 Male, age 51, unknown 86.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.3
Samples: 139

Max nTPM: 122.9
Min nTPM: 45.6
Std nTPM: 15.8
Median nTPM: 74.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 122.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 122.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 116.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 115.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 110.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 110.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 107.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 106.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 106.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 102.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 102.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.7
FF:10158-103A5 76 years, female 66.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.7
Pig sample Sample description nTPM
Midbrain
nTPM: 58.7
Samples: 4

Max nTPM: 73.4
Min nTPM: 43.7
Sample A Female 73.4
Sample B Female 65.4
Sample C Male 52.2
Sample D Male 43.7
Periaqueductal gray
nTPM: 53.7
Samples: 3

Max nTPM: 54.8
Min nTPM: 51.7
Sample B Female 51.7
Sample C Male 54.5
Sample D Male 54.8
Substantia nigra
nTPM: 57.2
Samples: 4

Max nTPM: 76.5
Min nTPM: 43.7
Sample A Female 76.5
Sample B Female 50.6
Sample C Male 57.8
Sample D Male 43.7
Superior colliculi
nTPM: 61.7
Samples: 4

Max nTPM: 77.9
Min nTPM: 51.8
Sample A Female 77.9
Sample B Female 64.5
Sample C Male 51.8
Sample D Male 52.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 177.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 177.2
Samples: 4

Max nTPM: 187.1
Min nTPM: 168.8
Sample A Male 176.1
Sample B Male 168.8
Sample C Female 176.8
Sample D Female 187.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
68744803 Antisense, RP_050208_01_F09, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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