MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:515.0 nTPM
HPA:515.0 nTPM
GTEx:365.0 nTPM
FANTOM5:104.5 Scaled Tags Per Million
Pig:180.0 nTPM
Mouse:137.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 515.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 471.7
2586 Male, age 75, left hemisphere 537.6
2828 Female, age 72, unknown 523.6
1833 Male, age 53, unknown 471.1
1827 Male, age 72, unknown 466.7
1870 Female, age 42, unknown 464.6
2666 Male, age 74, left hemisphere 460.4
1830 Male, age 51, unknown 455.0
2411 Female, age 72, unknown 448.2
2019 Male, age 18, unknown 447.4
2219 Male, age 76, both hemispheres 442.6
Dorsal raphe nucleus
nTPM: 492.9
2016 Female, age 72, unknown 527.7
1828 Male, age 53, unknown 511.9
2298 Female, age 72, unknown 488.0
2047 Male, age 72, unknown 484.8
2750 Male, age 76, both hemispheres 451.9
Inferior colliculus
nTPM: 491.1
2849 Male, age 72, unknown 518.3
1848 Female, age 42, unknown 497.6
1890 Male, age 53, unknown 478.1
2097 Female, age 72, unknown 470.5
Median raphe nucleus
nTPM: 472.1
2220 Male, age 76, midline 472.1
Pedunculopontine tegmental nucleus
nTPM: 457.9
1921 Female, age 85, both hemispheres 480.7
2334 Male, age 80, both hemispheres 467.4
2338 Male, age 61, both hemispheres 425.4
Periaquaductal grey, anterior
nTPM: 478.0
2502 Female, age 75, unknown 489.3
1795 Male, age 51, unknown 482.6
1947 Male, age 18, unknown 462.0
Periaquaductal grey, dorsal
nTPM: 515.0
2850 Male, age 76, both hemispheres 556.8
1840 Male, age 53, unknown 531.9
1831 Male, age 72, unknown 488.9
2464 Female, age 72, unknown 482.6
Periaquaductal grey, lateral
nTPM: 503.4
2140 Male, age 76, both hemispheres 540.7
2053 Male, age 18, unknown 501.0
2272 Male, age 74, both hemispheres 468.5
Pretectal area
nTPM: 479.9
2825 Male, age 18, unknown 496.2
2273 Male, age 74, both hemispheres 494.4
2316 Male, age 76, right hemisphere 489.8
2667 Female, age 75, unknown 488.2
1944 Female, age 72, unknown 483.8
1817 Female, age 42, unknown 482.0
2224 Female, age 72, unknown 479.5
1816 Male, age 51, unknown 475.5
1815 Male, age 53, unknown 472.9
2407 Male, age 75, both hemispheres 472.2
2007 Male, age 72, unknown 443.9
Red nucleus
nTPM: 482.1
2769 Male, age 72, unknown 512.7
2227 Male, age 72, unknown 503.1
1821 Female, age 72, unknown 502.7
2503 Female, age 72, unknown 498.3
1954 Female, age 42, unknown 486.1
2588 Male, age 74, left hemisphere 478.7
2823 Male, age 76, right hemisphere 475.7
1904 Male, age 53, unknown 473.9
1865 Male, age 51, unknown 473.2
2725 Female, age 75, unknown 467.1
2584 Male, age 75, left hemisphere 460.6
2785 Male, age 18, unknown 453.7
Substantia nigra
nTPM: 495.7
2699 Male, age 18, unknown 592.2
1916 Female, age 42, unknown 522.1
1851 Male, age 51, unknown 517.9
2665 Male, age 74, both hemispheres 489.3
2590 Female, age 75, unknown 482.7
1889 Female, age 72, unknown 480.2
2583 Male, age 75, right hemisphere 476.2
2241 Male, age 72, unknown 469.2
2409 Female, age 72, unknown 465.9
1941 Male, age 53, unknown 461.8
Superior colliculus
nTPM: 486.1
2664 Male, age 75, both hemispheres 517.6
1995 Male, age 72, unknown 506.4
1796 Male, age 53, unknown 500.8
2668 Female, age 75, unknown 486.3
1913 Female, age 42, unknown 481.8
1839 Male, age 51, unknown 478.1
2087 Female, age 72, unknown 477.9
2261 Male, age 18, unknown 476.9
2587 Male, age 74, left hemisphere 469.7
1895 Male, age 76, right hemisphere 465.6
Ventral tegmental area
nTPM: 480.2
1915 Female, age 42, unknown 495.4
1942 Male, age 51, unknown 486.1
2021 Male, age 53, unknown 483.7
2410 Female, age 72, unknown 474.3
2218 Male, age 76, both hemispheres 472.9
2223 Female, age 72, unknown 468.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 365.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 365.0
Samples: 139

Max nTPM: 1057.1
Min nTPM: 37.6
Std nTPM: 181.7
Median nTPM: 337.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1057.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 861.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 775.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 748.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 735.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 734.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 704.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 687.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 687.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 675.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 671.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.5
FF:10158-103A5 76 years, female 104.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 180.0
Pig sample Sample description nTPM
Midbrain
nTPM: 177.0
Samples: 4

Max nTPM: 368.3
Min nTPM: 82.5
Sample A Female 368.3
Sample B Female 140.7
Sample C Male 116.3
Sample D Male 82.5
Periaqueductal gray
nTPM: 159.2
Samples: 3

Max nTPM: 174.5
Min nTPM: 149.7
Sample B Female 149.7
Sample C Male 174.5
Sample D Male 153.3
Substantia nigra
nTPM: 180.0
Samples: 4

Max nTPM: 205.5
Min nTPM: 146.3
Sample A Female 205.5
Sample B Female 183.9
Sample C Male 146.3
Sample D Male 184.4
Superior colliculi
nTPM: 177.6
Samples: 4

Max nTPM: 276.6
Min nTPM: 128.0
Sample A Female 175.4
Sample B Female 276.6
Sample C Male 128.0
Sample D Male 130.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 137.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 137.5
Samples: 4

Max nTPM: 160.0
Min nTPM: 117.0
Sample A Male 160.0
Sample B Male 117.0
Sample C Female 124.9
Sample D Female 148.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68632918 Antisense, RP_050125_02_B01, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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