BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3.1 nTPM
HPA:3.1 nTPM
GTEx:5.3 nTPM
FANTOM5:5.6 Scaled Tags Per Million
Pig:5.7 nTPM
Mouse:4.1 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.9
2290 Female, age 72, unknown 4.2
1854 Male, age 80, left hemisphere 3.3
1857 Female, age 85, left hemisphere 3.2
2846 Female, age 79, unknown 3.2
2289 Male, age 61, right hemisphere 2.7
2288 Male, age 75, left hemisphere 2.6
1781 Male, age 74, unknown 2.4
2481 Female, age 94, left hemisphere 1.5
Claustrum
nTPM: 1.9
2284 Female, age 91, both hemispheres 2.3
2645 Female, age 72, unknown 2.1
2491 Male, age 75, both hemispheres 2.0
1956 Male, age 74, unknown 1.9
2392 Female, age 94, both hemispheres 1.9
2568 Male, age 61, both hemispheres 1.9
2292 Female, age 85, both hemispheres 1.8
2198 Male, age 80, both hemispheres 1.7
2196 Female, age 79, unknown 1.4
Globus pallidus, externus
nTPM: 1.1
2567 Female, age 72, unknown 1.6
2646 Male, age 61, right hemisphere 1.4
2395 Male, age 75, both hemispheres 1.2
1996 Male, age 80, right hemisphere 0.9
2772 Female, age 79, unknown 0.6
Globus pallidus, internus
nTPM: 1.1
2111 Female, age 85, right hemisphere 1.5
1818 Male, age 74, unknown 1.2
2037 Male, age 80, right hemisphere 1.1
2483 Female, age 94, right hemisphere 1.1
2778 Female, age 91, both hemispheres 1.1
2287 Male, age 75, right hemisphere 1.0
2566 Female, age 72, unknown 0.9
Nucleus accumbens
nTPM: 2.7
1783 Male, age 74, unknown 4.0
1806 Female, age 85, left hemisphere 3.2
2824 Male, age 61, right hemisphere 3.0
1856 Female, age 91, right hemisphere 2.8
2286 Male, age 75, left hemisphere 2.7
2732 Male, age 80, right hemisphere 2.4
2698 Female, age 72, unknown 1.8
2391 Female, age 94, left hemisphere 1.7
Nucleus basalis of Meynert
nTPM: 2.3
2393 Male, age 80, right hemisphere 3.5
2484 Female, age 94, left hemisphere 2.3
2821 Male, age 75, both hemispheres 1.9
2569 Male, age 61, both hemispheres 1.4
Nucleus of the diagonal band
nTPM: 1.7
2029 Male, age 61, right hemisphere 2.3
2195 Female, age 85, both hemispheres 1.8
2775 Male, age 80, right hemisphere 1.6
1979 Male, age 74, unknown 1.5
1812 Female, age 91, both hemispheres 1.4
Olfactory tubercle
nTPM: 2.1
1998 Female, age 91, both hemispheres 2.4
2487 Female, age 94, left hemisphere 2.4
2856 Male, age 75, right hemisphere 2.3
1846 Male, age 80, right hemisphere 1.5
Putamen
nTPM: 3.1
1838 Male, age 80, right hemisphere 4.0
2466 Female, age 79, unknown 4.0
1829 Male, age 74, unknown 3.7
2489 Female, age 72, unknown 3.7
1937 Female, age 91, right hemisphere 3.1
2647 Male, age 75, left hemisphere 1.8
2482 Female, age 94, left hemisphere 1.6
Septal nuclei
nTPM: 1.7
2009 Female, age 91, both hemispheres 2.2
2031 Female, age 72, unknown 1.9
2059 Female, age 85, both hemispheres 1.9
2629 Female, age 94, right hemisphere 1.7
1960 Male, age 74, unknown 1.5
2394 Male, age 61, left hemisphere 1.4
2199 Male, age 80, right hemisphere 1.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 5.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.2
Samples: 246

Max nTPM: 17.6
Min nTPM: 0.2
Std nTPM: 2.6
Median nTPM: 5.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 17.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 15.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 11.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 11.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 10.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 10.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 10.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 10.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 10.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 10.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 10.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.3
Samples: 246

Max nTPM: 13.6
Min nTPM: 0.3
Std nTPM: 2.4
Median nTPM: 5.0
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 13.6
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 12.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 12.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 10.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 10.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 10.3
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 10.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 10.1
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 10.0
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 9.8
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 9.8
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Brain - Putamen (basal ganglia)
Average nTPM: 5.1
Samples: 205

Max nTPM: 14.3
Min nTPM: 0.0
Std nTPM: 2.8
Median nTPM: 4.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 14.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 13.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 12.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 12.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 11.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 11.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 11.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 11.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 11.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 10.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 10.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.0
FF:10164-103B2 76 years, female 2.0
Globus pallidus
Scaled Tags Per Million: 0.2
FF:10161-103A8 76 years, female 0.5
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 3.1
FF:10037-101F1 23-56 years, mixed 3.1
Putamen
Scaled Tags Per Million: 5.6
FF:10176-103C5 60 years, female 5.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.7
Pig sample Sample description nTPM
Caudate
nTPM: 5.7
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.9
Sample A Female 5.7
Sample B Female 5.7
Sample C Male 4.9
Sample D Male 6.5
Putamen
nTPM: 4.7
Samples: 4

Max nTPM: 5.7
Min nTPM: 3.5
Sample A Female 4.9
Sample B Female 5.7
Sample C Male 3.5
Sample D Male 4.7
Septum
nTPM: 5.1
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.4
Sample A Female 4.9
Sample B Female 5.8
Sample C Male 4.4
Sample D Male 5.3
Ventral pallidum
nTPM: 5.1
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.4
Sample A Female 5.0
Sample B Female 5.3
Sample C Male 4.4
Sample D Male 5.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.1
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.7
Sample A Male 3.8
Sample B Male 3.7
Sample C Female 3.8
Sample D Female 4.9
Septum
nTPM: 2.3
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.4
Sample A Male 1.9
Sample B Male 2.9
Sample C Female 2.9
Sample D Female 1.4
Ventral forebrain
nTPM: 3.4
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.4
Sample A Male 3.4
Sample B Male 2.4
Sample C Female 3.9
Sample D Female 3.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71492898 Antisense, RP_050913_01_G04, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71492898 Antisense, RP_050913_01_G04, Mouse strain C57BL/6J (56 days, male) 0.0

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