BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:59.5 nTPM
HPA:59.5 nTPM
GTEx:60.3 nTPM
FANTOM5:41.8 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA043986
Glial cells Not detected
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 59.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 56.0
1781 Male, age 74, unknown 58.9
1857 Female, age 85, left hemisphere 57.0
2846 Female, age 79, unknown 57.0
1854 Male, age 80, left hemisphere 56.9
2288 Male, age 75, left hemisphere 55.3
2290 Female, age 72, unknown 55.3
2289 Male, age 61, right hemisphere 55.2
2481 Female, age 94, left hemisphere 53.0
Claustrum
nTPM: 58.9
2568 Male, age 61, both hemispheres 65.3
2491 Male, age 75, both hemispheres 61.0
2645 Female, age 72, unknown 60.5
2198 Male, age 80, both hemispheres 60.3
2284 Female, age 91, both hemispheres 58.9
2196 Female, age 79, unknown 57.2
1956 Male, age 74, unknown 56.9
2392 Female, age 94, both hemispheres 55.5
2292 Female, age 85, both hemispheres 54.3
Globus pallidus, externus
nTPM: 54.2
2772 Female, age 79, unknown 56.7
1996 Male, age 80, right hemisphere 54.5
2646 Male, age 61, right hemisphere 54.3
2395 Male, age 75, both hemispheres 53.2
2567 Female, age 72, unknown 52.3
Globus pallidus, internus
nTPM: 53.2
1818 Male, age 74, unknown 55.1
2483 Female, age 94, right hemisphere 55.0
2287 Male, age 75, right hemisphere 54.3
2037 Male, age 80, right hemisphere 53.2
2566 Female, age 72, unknown 53.2
2778 Female, age 91, both hemispheres 52.2
2111 Female, age 85, right hemisphere 49.7
Nucleus accumbens
nTPM: 56.3
1856 Female, age 91, right hemisphere 62.1
1783 Male, age 74, unknown 58.8
1806 Female, age 85, left hemisphere 57.0
2698 Female, age 72, unknown 56.0
2824 Male, age 61, right hemisphere 55.9
2286 Male, age 75, left hemisphere 55.0
2391 Female, age 94, left hemisphere 53.1
2732 Male, age 80, right hemisphere 52.4
Nucleus basalis of Meynert
nTPM: 53.8
2569 Male, age 61, both hemispheres 56.5
2393 Male, age 80, right hemisphere 53.0
2484 Female, age 94, left hemisphere 52.9
2821 Male, age 75, both hemispheres 52.9
Nucleus of the diagonal band
nTPM: 59.1
2775 Male, age 80, right hemisphere 62.7
2195 Female, age 85, both hemispheres 61.1
1812 Female, age 91, both hemispheres 60.7
2029 Male, age 61, right hemisphere 58.2
1979 Male, age 74, unknown 52.9
Olfactory tubercle
nTPM: 59.5
1998 Female, age 91, both hemispheres 61.5
2487 Female, age 94, left hemisphere 59.8
1846 Male, age 80, right hemisphere 59.4
2856 Male, age 75, right hemisphere 57.2
Putamen
nTPM: 53.9
2647 Male, age 75, left hemisphere 56.5
1937 Female, age 91, right hemisphere 56.4
1838 Male, age 80, right hemisphere 55.8
2466 Female, age 79, unknown 53.2
2482 Female, age 94, left hemisphere 52.6
2489 Female, age 72, unknown 52.0
1829 Male, age 74, unknown 51.0
Septal nuclei
nTPM: 56.9
1960 Male, age 74, unknown 61.8
2031 Female, age 72, unknown 60.2
2394 Male, age 61, left hemisphere 58.0
2629 Female, age 94, right hemisphere 56.7
2009 Female, age 91, both hemispheres 54.5
2199 Male, age 80, right hemisphere 53.7
2059 Female, age 85, both hemispheres 53.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 60.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 49.8
Samples: 246

Max nTPM: 125.0
Min nTPM: 21.2
Std nTPM: 15.4
Median nTPM: 48.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 125.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 121.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 99.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 97.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 95.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 93.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 91.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 88.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 85.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 84.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 82.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 60.3
Samples: 246

Max nTPM: 118.1
Min nTPM: 19.4
Std nTPM: 15.7
Median nTPM: 58.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 118.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 102.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 101.2
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 100.7
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 99.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 95.8
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 95.6
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 95.6
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 95.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 93.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 92.1
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Brain - Putamen (basal ganglia)
Average nTPM: 51.9
Samples: 205

Max nTPM: 102.1
Min nTPM: 23.7
Std nTPM: 13.8
Median nTPM: 49.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 102.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 92.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 91.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 90.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 86.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 85.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 83.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 83.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 82.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 79.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 79.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.0
FF:10164-103B2 76 years, female 39.0
Globus pallidus
Scaled Tags Per Million: 16.9
FF:10161-103A8 76 years, female 21.3
FF:10175-103C4 60 years, female 12.6
Nucleus accumbens
Scaled Tags Per Million: 41.8
FF:10037-101F1 23-56 years, mixed 41.8
Putamen
Scaled Tags Per Million: 40.0
FF:10176-103C5 60 years, female 40.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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