MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.7 nTPM
HPA:36.7 nTPM
GTEx:23.1 nTPM
FANTOM5:4.4 Scaled Tags Per Million
Pig:70.8 nTPM
Mouse:0.2 nTPM
Allen mouse:11.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.3
2219 Male, age 76, both hemispheres 43.4
1830 Male, age 51, unknown 24.2
2411 Female, age 72, unknown 23.9
2586 Male, age 75, left hemisphere 23.8
1833 Male, age 53, unknown 23.3
2828 Female, age 72, unknown 21.9
2019 Male, age 18, unknown 21.8
1827 Male, age 72, unknown 20.1
1870 Female, age 42, unknown 16.1
2666 Male, age 74, left hemisphere 14.9
Dorsal raphe nucleus
nTPM: 31.8
2298 Female, age 72, unknown 58.7
1828 Male, age 53, unknown 37.9
2016 Female, age 72, unknown 30.5
2047 Male, age 72, unknown 16.9
2750 Male, age 76, both hemispheres 15.1
Inferior colliculus
nTPM: 25.5
2097 Female, age 72, unknown 41.7
1890 Male, age 53, unknown 28.0
2849 Male, age 72, unknown 16.6
1848 Female, age 42, unknown 15.5
Median raphe nucleus
nTPM: 4.3
2220 Male, age 76, midline 4.3
Pedunculopontine tegmental nucleus
nTPM: 24.1
2338 Male, age 61, both hemispheres 39.2
2334 Male, age 80, both hemispheres 21.4
1921 Female, age 85, both hemispheres 11.8
Periaquaductal grey, anterior
nTPM: 27.5
2502 Female, age 75, unknown 33.0
1795 Male, age 51, unknown 30.5
1947 Male, age 18, unknown 19.1
Periaquaductal grey, dorsal
nTPM: 24.8
1831 Male, age 72, unknown 38.0
2464 Female, age 72, unknown 29.6
2850 Male, age 76, both hemispheres 28.3
1840 Male, age 53, unknown 3.3
Periaquaductal grey, lateral
nTPM: 36.7
2272 Male, age 74, both hemispheres 57.0
2140 Male, age 76, both hemispheres 29.9
2053 Male, age 18, unknown 23.1
Pretectal area
nTPM: 28.2
2273 Male, age 74, both hemispheres 48.6
2316 Male, age 76, right hemisphere 43.5
2224 Female, age 72, unknown 38.3
1815 Male, age 53, unknown 29.7
2407 Male, age 75, both hemispheres 27.4
1817 Female, age 42, unknown 23.2
2007 Male, age 72, unknown 22.7
1816 Male, age 51, unknown 21.8
1944 Female, age 72, unknown 19.2
2825 Male, age 18, unknown 18.5
2667 Female, age 75, unknown 17.8
Red nucleus
nTPM: 27.6
2769 Male, age 72, unknown 38.2
2503 Female, age 72, unknown 37.2
2227 Male, age 72, unknown 37.0
1865 Male, age 51, unknown 36.5
1904 Male, age 53, unknown 35.1
2785 Male, age 18, unknown 34.3
1954 Female, age 42, unknown 26.4
2823 Male, age 76, right hemisphere 24.7
1821 Female, age 72, unknown 23.3
2725 Female, age 75, unknown 18.8
2584 Male, age 75, left hemisphere 12.0
2588 Male, age 74, left hemisphere 7.3
Substantia nigra
nTPM: 19.8
2699 Male, age 18, unknown 50.9
1851 Male, age 51, unknown 30.8
2665 Male, age 74, both hemispheres 29.9
2590 Female, age 75, unknown 21.1
1889 Female, age 72, unknown 19.4
2583 Male, age 75, right hemisphere 17.1
1916 Female, age 42, unknown 13.1
1941 Male, age 53, unknown 9.7
2241 Male, age 72, unknown 5.7
2409 Female, age 72, unknown 0.0
Superior colliculus
nTPM: 28.4
1995 Male, age 72, unknown 41.0
2668 Female, age 75, unknown 36.5
1796 Male, age 53, unknown 30.9
2587 Male, age 74, left hemisphere 30.6
1913 Female, age 42, unknown 29.5
2664 Male, age 75, both hemispheres 28.8
1895 Male, age 76, right hemisphere 25.0
2087 Female, age 72, unknown 23.7
2261 Male, age 18, unknown 20.7
1839 Male, age 51, unknown 17.4
Ventral tegmental area
nTPM: 33.3
2021 Male, age 53, unknown 46.9
1915 Female, age 42, unknown 41.0
2223 Female, age 72, unknown 35.7
2218 Male, age 76, both hemispheres 34.7
2410 Female, age 72, unknown 20.9
1942 Male, age 51, unknown 20.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.1
Samples: 139

Max nTPM: 105.1
Min nTPM: 0.0
Std nTPM: 19.2
Median nTPM: 18.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 105.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 91.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 82.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 77.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 72.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 72.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 68.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 62.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 57.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 57.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 55.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.4
FF:10158-103A5 76 years, female 4.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 70.8
Pig sample Sample description nTPM
Midbrain
nTPM: 59.6
Samples: 4

Max nTPM: 83.7
Min nTPM: 49.1
Sample A Female 83.7
Sample B Female 52.9
Sample C Male 49.1
Sample D Male 52.8
Periaqueductal gray
nTPM: 49.0
Samples: 3

Max nTPM: 58.3
Min nTPM: 43.5
Sample B Female 43.5
Sample C Male 58.3
Sample D Male 45.2
Substantia nigra
nTPM: 57.0
Samples: 4

Max nTPM: 78.5
Min nTPM: 42.4
Sample A Female 78.5
Sample B Female 60.1
Sample C Male 46.8
Sample D Male 42.4
Superior colliculi
nTPM: 70.8
Samples: 4

Max nTPM: 90.1
Min nTPM: 53.1
Sample A Female 90.1
Sample B Female 84.7
Sample C Male 55.4
Sample D Male 53.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 1.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.7
69169367 Antisense, RP_050321_03_D08, Mouse strain C57BL/6J (56 days, male) 12.8
72129296 Antisense, RP_051017_03_F12, Mouse strain C57BL/6J (56 days, male) 10.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.