MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:59.6 nTPM
HPA:59.6 nTPM
GTEx:52.6 nTPM
FANTOM5:476.9 Scaled Tags Per Million
Pig:43.1 nTPM
Mouse:12.2 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.9
1830 Male, age 51, unknown 59.3
2411 Female, age 72, unknown 59.3
1833 Male, age 53, unknown 55.3
2019 Male, age 18, unknown 54.0
2586 Male, age 75, left hemisphere 52.1
1870 Female, age 42, unknown 49.1
2828 Female, age 72, unknown 48.5
2666 Male, age 74, left hemisphere 46.4
2219 Male, age 76, both hemispheres 37.7
1827 Male, age 72, unknown 37.5
Dorsal raphe nucleus
nTPM: 37.2
2750 Male, age 76, both hemispheres 67.0
1828 Male, age 53, unknown 35.5
2016 Female, age 72, unknown 34.7
2047 Male, age 72, unknown 27.8
2298 Female, age 72, unknown 21.1
Inferior colliculus
nTPM: 33.0
1890 Male, age 53, unknown 36.4
2849 Male, age 72, unknown 34.9
1848 Female, age 42, unknown 34.2
2097 Female, age 72, unknown 26.6
Median raphe nucleus
nTPM: 29.0
2220 Male, age 76, midline 29.0
Pedunculopontine tegmental nucleus
nTPM: 39.8
2334 Male, age 80, both hemispheres 45.2
1921 Female, age 85, both hemispheres 37.5
2338 Male, age 61, both hemispheres 36.6
Periaquaductal grey, anterior
nTPM: 35.6
2502 Female, age 75, unknown 41.9
1947 Male, age 18, unknown 33.5
1795 Male, age 51, unknown 31.5
Periaquaductal grey, dorsal
nTPM: 25.9
2464 Female, age 72, unknown 40.7
1831 Male, age 72, unknown 27.0
1840 Male, age 53, unknown 21.1
2850 Male, age 76, both hemispheres 14.6
Periaquaductal grey, lateral
nTPM: 27.5
2053 Male, age 18, unknown 33.8
2272 Male, age 74, both hemispheres 30.6
2140 Male, age 76, both hemispheres 18.2
Pretectal area
nTPM: 34.2
2316 Male, age 76, right hemisphere 52.4
2407 Male, age 75, both hemispheres 45.8
1815 Male, age 53, unknown 42.7
2825 Male, age 18, unknown 37.4
2007 Male, age 72, unknown 34.5
1817 Female, age 42, unknown 34.0
2667 Female, age 75, unknown 27.5
2224 Female, age 72, unknown 26.8
1944 Female, age 72, unknown 25.8
1816 Male, age 51, unknown 25.1
2273 Male, age 74, both hemispheres 24.1
Red nucleus
nTPM: 59.6
2823 Male, age 76, right hemisphere 82.0
1865 Male, age 51, unknown 65.4
2588 Male, age 74, left hemisphere 65.4
1904 Male, age 53, unknown 62.8
2769 Male, age 72, unknown 61.9
2227 Male, age 72, unknown 61.6
2584 Male, age 75, left hemisphere 58.6
2785 Male, age 18, unknown 58.5
2503 Female, age 72, unknown 57.0
1821 Female, age 72, unknown 54.0
1954 Female, age 42, unknown 50.1
2725 Female, age 75, unknown 38.0
Substantia nigra
nTPM: 40.1
2583 Male, age 75, right hemisphere 50.4
2590 Female, age 75, unknown 48.7
1851 Male, age 51, unknown 44.9
2409 Female, age 72, unknown 44.0
2699 Male, age 18, unknown 38.8
2241 Male, age 72, unknown 38.1
1889 Female, age 72, unknown 37.2
2665 Male, age 74, both hemispheres 37.1
1941 Male, age 53, unknown 31.5
1916 Female, age 42, unknown 30.4
Superior colliculus
nTPM: 42.2
1895 Male, age 76, right hemisphere 55.5
1913 Female, age 42, unknown 54.4
2668 Female, age 75, unknown 52.5
1995 Male, age 72, unknown 51.4
1839 Male, age 51, unknown 42.8
2587 Male, age 74, left hemisphere 39.7
2664 Male, age 75, both hemispheres 35.5
1796 Male, age 53, unknown 33.1
2087 Female, age 72, unknown 28.8
2261 Male, age 18, unknown 28.5
Ventral tegmental area
nTPM: 44.1
2410 Female, age 72, unknown 56.1
2223 Female, age 72, unknown 51.7
2021 Male, age 53, unknown 44.0
1942 Male, age 51, unknown 40.3
2218 Male, age 76, both hemispheres 36.5
1915 Female, age 42, unknown 36.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.6
Samples: 139

Max nTPM: 132.1
Min nTPM: 20.5
Std nTPM: 20.2
Median nTPM: 49.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 132.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 129.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 115.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 109.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 105.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 104.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 95.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 93.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 92.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 91.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 86.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 476.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 476.9
FF:10158-103A5 76 years, female 476.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.1
Pig sample Sample description nTPM
Midbrain
nTPM: 40.0
Samples: 4

Max nTPM: 48.3
Min nTPM: 34.4
Sample A Female 48.3
Sample B Female 42.0
Sample C Male 35.2
Sample D Male 34.4
Periaqueductal gray
nTPM: 30.4
Samples: 3

Max nTPM: 34.3
Min nTPM: 26.5
Sample B Female 34.3
Sample C Male 26.5
Sample D Male 30.5
Substantia nigra
nTPM: 43.1
Samples: 4

Max nTPM: 65.5
Min nTPM: 30.8
Sample A Female 34.7
Sample B Female 30.8
Sample C Male 41.4
Sample D Male 65.5
Superior colliculi
nTPM: 34.1
Samples: 4

Max nTPM: 47.3
Min nTPM: 19.2
Sample A Female 32.4
Sample B Female 19.2
Sample C Male 37.3
Sample D Male 47.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 14.2
Min nTPM: 11.0
Sample A Male 14.2
Sample B Male 11.3
Sample C Female 11.0
Sample D Female 12.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
74431685 Antisense, RP_060207_02_D02, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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