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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:529.2 nTPM
HPA:529.2 nTPM
GTEx:335.4 nTPM
FANTOM5:1961.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA063471
Endocrine cells Not detected
Enterocytes Not detected
Enterocytes - Microvilli Not detected
Goblet cells Not detected
Paneth cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 529.2
overview
Male, age 65
Small intestine sample 232
nTPM: 627.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 809.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 623.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 56.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 335.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 335.4
Samples: 187

Max nTPM: 2087.8
Min nTPM: 0.0
Std nTPM: 348.5
Median nTPM: 249.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2087.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1660.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1469.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1449.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1401.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1314.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1190.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1114.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1110.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1065.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1043.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 968.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 883.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 836.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 789.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 785.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 773.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 773.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 771.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 701.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 696.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 656.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 656.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 650.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 635.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 612.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 612.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 599.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 598.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 597.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 587.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 586.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 576.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 570.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 561.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 559.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 555.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 547.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 541.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 537.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 535.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 526.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 525.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 521.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 507.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 507.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 506.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 506.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 496.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 494.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 488.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 484.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 471.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 459.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 459.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 453.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 438.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 432.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 415.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 411.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 389.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 388.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 388.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 379.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 375.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 370.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 367.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 365.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 357.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 342.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 337.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 336.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 335.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 331.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 330.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 329.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 328.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 326.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 325.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 319.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 317.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 301.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 292.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 266.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 265.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 265.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 264.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 261.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 258.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 253.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 251.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 250.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 249.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 249.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 242.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 236.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 227.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 223.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 220.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 220.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 215.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 212.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 209.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 207.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 205.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 205.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 203.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 199.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 198.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 187.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 186.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 185.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 182.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 167.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 166.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 161.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 160.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 159.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 156.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 154.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 152.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 149.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 145.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 143.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 135.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 121.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 115.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 114.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 113.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 110.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 110.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 106.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 97.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 95.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 88.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 71.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 70.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 69.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 67.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 63.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 62.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 53.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 53.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 53.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 48.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 44.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 42.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 42.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 41.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 35.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 35.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 32.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 31.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 30.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 23.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 23.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 22.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 22.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 21.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 20.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 20.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 20.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 14.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 12.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 12.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 11.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 11.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 11.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 11.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 9.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 8.9
GTEX-1192X-2526-SM-59868 50-59 years, male 7.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 6.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 5.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 4.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 3.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 3.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 3.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 0.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1961.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1961.9
FF:10024-101D6 15,40,85 years, mixed 1961.9

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