MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.1 nTPM
HPA:41.1 nTPM
GTEx:85.7 nTPM
FANTOM5:27.4 Scaled Tags Per Million
Pig:573.2 nTPM
Mouse:300.3 nTPM
Allen mouse:13.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.4
2019 Male, age 18, unknown 96.2
2219 Male, age 76, both hemispheres 7.7
1827 Male, age 72, unknown 0.0
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
1870 Female, age 42, unknown 0.0
2411 Female, age 72, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
2666 Male, age 74, left hemisphere 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 22.7
1828 Male, age 53, unknown 99.0
2047 Male, age 72, unknown 14.6
2016 Female, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 0.0
1848 Female, age 42, unknown 0.0
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 41.1
2334 Male, age 80, both hemispheres 66.9
2338 Male, age 61, both hemispheres 37.1
1921 Female, age 85, both hemispheres 19.4
Periaquaductal grey, anterior
nTPM: 0.0
1795 Male, age 51, unknown 0.0
1947 Male, age 18, unknown 0.0
2502 Female, age 75, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 0.0
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.0
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 38.6
1944 Female, age 72, unknown 130.1
1817 Female, age 42, unknown 105.8
1816 Male, age 51, unknown 83.0
2007 Male, age 72, unknown 73.1
2667 Female, age 75, unknown 31.3
1815 Male, age 53, unknown 1.4
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 20.3
1821 Female, age 72, unknown 93.8
2785 Male, age 18, unknown 54.0
2503 Female, age 72, unknown 33.6
1954 Female, age 42, unknown 26.7
2823 Male, age 76, right hemisphere 24.2
1865 Male, age 51, unknown 9.3
2588 Male, age 74, left hemisphere 2.0
1904 Male, age 53, unknown 0.0
2227 Male, age 72, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
Substantia nigra
nTPM: 20.7
1941 Male, age 53, unknown 77.4
1889 Female, age 72, unknown 62.5
1916 Female, age 42, unknown 35.6
2665 Male, age 74, both hemispheres 30.4
1851 Male, age 51, unknown 1.4
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 16.9
2668 Female, age 75, unknown 94.2
2087 Female, age 72, unknown 55.7
1895 Male, age 76, right hemisphere 19.1
1796 Male, age 53, unknown 0.0
1839 Male, age 51, unknown 0.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2261 Male, age 18, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 10.2
2218 Male, age 76, both hemispheres 36.9
2410 Female, age 72, unknown 24.4
1915 Female, age 42, unknown 0.0
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2223 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.7
Samples: 139

Max nTPM: 839.7
Min nTPM: 0.5
Std nTPM: 131.9
Median nTPM: 29.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 839.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 789.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 411.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 383.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 367.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 357.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 332.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 297.7
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 293.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 291.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 278.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.4
FF:10158-103A5 76 years, female 27.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 573.2
Pig sample Sample description nTPM
Midbrain
nTPM: 323.2
Samples: 4

Max nTPM: 495.4
Min nTPM: 61.8
Sample A Female 61.8
Sample B Female 311.5
Sample C Male 495.4
Sample D Male 424.1
Periaqueductal gray
nTPM: 203.6
Samples: 3

Max nTPM: 269.6
Min nTPM: 130.1
Sample B Female 269.6
Sample C Male 211.2
Sample D Male 130.1
Substantia nigra
nTPM: 271.0
Samples: 4

Max nTPM: 578.5
Min nTPM: 120.9
Sample A Female 578.5
Sample B Female 120.9
Sample C Male 210.1
Sample D Male 174.3
Superior colliculi
nTPM: 573.2
Samples: 4

Max nTPM: 907.2
Min nTPM: 279.5
Sample A Female 589.6
Sample B Female 279.5
Sample C Male 907.2
Sample D Male 516.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 300.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 300.3
Samples: 4

Max nTPM: 309.7
Min nTPM: 291.6
Sample A Male 292.0
Sample B Male 309.7
Sample C Female 307.8
Sample D Female 291.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.1
73512198 Antisense, RP_050712_04_B04, Mouse strain C57BL/6J (56 days, male) 13.1
70919083 Antisense, RP_050712_04_B04, Mouse strain C57BL/6J (56 days, male) 8.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.