MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:73.2 nTPM
HPA:73.2 nTPM
GTEx:85.3 nTPM
FANTOM5:69.5 Scaled Tags Per Million
Pig:85.7 nTPM
Mouse:191.5 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.5
2411 Female, age 72, unknown 70.1
2666 Male, age 74, left hemisphere 68.3
1827 Male, age 72, unknown 65.3
1830 Male, age 51, unknown 63.4
1833 Male, age 53, unknown 62.9
2219 Male, age 76, both hemispheres 60.8
2828 Female, age 72, unknown 60.3
2019 Male, age 18, unknown 58.7
1870 Female, age 42, unknown 58.1
2586 Male, age 75, left hemisphere 57.5
Dorsal raphe nucleus
nTPM: 68.0
2298 Female, age 72, unknown 74.9
2047 Male, age 72, unknown 68.1
2016 Female, age 72, unknown 67.5
2750 Male, age 76, both hemispheres 66.2
1828 Male, age 53, unknown 63.4
Inferior colliculus
nTPM: 62.0
2097 Female, age 72, unknown 64.2
1848 Female, age 42, unknown 61.6
2849 Male, age 72, unknown 61.3
1890 Male, age 53, unknown 61.0
Median raphe nucleus
nTPM: 66.4
2220 Male, age 76, midline 66.4
Pedunculopontine tegmental nucleus
nTPM: 68.3
2338 Male, age 61, both hemispheres 76.4
2334 Male, age 80, both hemispheres 65.8
1921 Female, age 85, both hemispheres 62.7
Periaquaductal grey, anterior
nTPM: 66.3
2502 Female, age 75, unknown 71.3
1947 Male, age 18, unknown 64.3
1795 Male, age 51, unknown 63.3
Periaquaductal grey, dorsal
nTPM: 60.8
2850 Male, age 76, both hemispheres 62.4
1840 Male, age 53, unknown 61.2
2464 Female, age 72, unknown 61.1
1831 Male, age 72, unknown 58.4
Periaquaductal grey, lateral
nTPM: 73.2
2272 Male, age 74, both hemispheres 90.4
2053 Male, age 18, unknown 66.7
2140 Male, age 76, both hemispheres 62.7
Pretectal area
nTPM: 65.7
2273 Male, age 74, both hemispheres 77.0
2224 Female, age 72, unknown 72.6
1944 Female, age 72, unknown 72.1
1817 Female, age 42, unknown 70.9
2007 Male, age 72, unknown 68.0
1816 Male, age 51, unknown 65.4
2825 Male, age 18, unknown 63.3
1815 Male, age 53, unknown 60.6
2316 Male, age 76, right hemisphere 60.4
2667 Female, age 75, unknown 56.5
2407 Male, age 75, both hemispheres 56.0
Red nucleus
nTPM: 62.0
1954 Female, age 42, unknown 66.6
1821 Female, age 72, unknown 65.6
2503 Female, age 72, unknown 65.3
2725 Female, age 75, unknown 64.6
1865 Male, age 51, unknown 63.5
2823 Male, age 76, right hemisphere 63.3
1904 Male, age 53, unknown 61.8
2785 Male, age 18, unknown 61.8
2769 Male, age 72, unknown 60.5
2227 Male, age 72, unknown 57.9
2588 Male, age 74, left hemisphere 56.8
2584 Male, age 75, left hemisphere 55.9
Substantia nigra
nTPM: 66.0
2409 Female, age 72, unknown 79.0
1916 Female, age 42, unknown 75.2
1941 Male, age 53, unknown 67.1
2590 Female, age 75, unknown 66.9
1851 Male, age 51, unknown 66.5
2699 Male, age 18, unknown 66.0
2241 Male, age 72, unknown 64.3
1889 Female, age 72, unknown 61.4
2665 Male, age 74, both hemispheres 57.3
2583 Male, age 75, right hemisphere 55.9
Superior colliculus
nTPM: 62.5
2261 Male, age 18, unknown 66.8
2087 Female, age 72, unknown 65.1
1796 Male, age 53, unknown 63.8
2587 Male, age 74, left hemisphere 63.7
2668 Female, age 75, unknown 63.6
1995 Male, age 72, unknown 63.5
1913 Female, age 42, unknown 62.9
1839 Male, age 51, unknown 60.5
1895 Male, age 76, right hemisphere 59.1
2664 Male, age 75, both hemispheres 56.2
Ventral tegmental area
nTPM: 67.7
2410 Female, age 72, unknown 82.5
2223 Female, age 72, unknown 68.5
2021 Male, age 53, unknown 65.3
1915 Female, age 42, unknown 64.6
2218 Male, age 76, both hemispheres 64.2
1942 Male, age 51, unknown 60.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.3
Samples: 139

Max nTPM: 166.3
Min nTPM: 48.7
Std nTPM: 18.2
Median nTPM: 82.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 166.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 145.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 137.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 132.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 127.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 124.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 124.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 117.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 116.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 115.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 114.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.5
FF:10158-103A5 76 years, female 69.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 85.7
Pig sample Sample description nTPM
Midbrain
nTPM: 81.3
Samples: 4

Max nTPM: 105.7
Min nTPM: 63.4
Sample A Female 105.7
Sample B Female 75.9
Sample C Male 80.2
Sample D Male 63.4
Periaqueductal gray
nTPM: 61.8
Samples: 3

Max nTPM: 69.5
Min nTPM: 51.6
Sample B Female 64.3
Sample C Male 69.5
Sample D Male 51.6
Substantia nigra
nTPM: 80.0
Samples: 4

Max nTPM: 117.3
Min nTPM: 53.3
Sample A Female 117.3
Sample B Female 67.3
Sample C Male 82.2
Sample D Male 53.3
Superior colliculi
nTPM: 85.7
Samples: 4

Max nTPM: 103.4
Min nTPM: 70.9
Sample A Female 103.4
Sample B Female 74.4
Sample C Male 94.1
Sample D Male 70.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 191.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 191.5
Samples: 4

Max nTPM: 208.3
Min nTPM: 169.7
Sample A Male 204.0
Sample B Male 183.9
Sample C Female 169.7
Sample D Female 208.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
634449 Antisense, RP_040907_02_H10, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

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