MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:86.3 nTPM
HPA:86.3 nTPM
GTEx:86.8 nTPM
FANTOM5:3.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.1
2586 Male, age 75, left hemisphere 86.4
1827 Male, age 72, unknown 85.4
2411 Female, age 72, unknown 85.3
2019 Male, age 18, unknown 84.1
2828 Female, age 72, unknown 83.7
2666 Male, age 74, left hemisphere 81.8
1833 Male, age 53, unknown 81.5
1870 Female, age 42, unknown 80.4
1830 Male, age 51, unknown 77.7
2219 Male, age 76, both hemispheres 74.2
Dorsal raphe nucleus
nTPM: 82.6
2298 Female, age 72, unknown 85.1
1828 Male, age 53, unknown 83.4
2750 Male, age 76, both hemispheres 82.3
2047 Male, age 72, unknown 82.2
2016 Female, age 72, unknown 79.9
Inferior colliculus
nTPM: 78.4
2097 Female, age 72, unknown 81.9
1848 Female, age 42, unknown 79.8
1890 Male, age 53, unknown 77.4
2849 Male, age 72, unknown 74.6
Median raphe nucleus
nTPM: 79.0
2220 Male, age 76, midline 79.0
Pedunculopontine tegmental nucleus
nTPM: 80.8
1921 Female, age 85, both hemispheres 82.3
2334 Male, age 80, both hemispheres 80.7
2338 Male, age 61, both hemispheres 79.4
Periaquaductal grey, anterior
nTPM: 82.9
1947 Male, age 18, unknown 85.1
1795 Male, age 51, unknown 83.8
2502 Female, age 75, unknown 79.8
Periaquaductal grey, dorsal
nTPM: 76.6
2464 Female, age 72, unknown 79.0
1831 Male, age 72, unknown 77.3
1840 Male, age 53, unknown 77.1
2850 Male, age 76, both hemispheres 72.9
Periaquaductal grey, lateral
nTPM: 77.4
2272 Male, age 74, both hemispheres 79.9
2053 Male, age 18, unknown 78.4
2140 Male, age 76, both hemispheres 73.9
Pretectal area
nTPM: 84.0
1816 Male, age 51, unknown 90.9
1817 Female, age 42, unknown 90.7
2007 Male, age 72, unknown 90.0
1944 Female, age 72, unknown 87.1
2667 Female, age 75, unknown 87.1
1815 Male, age 53, unknown 84.2
2316 Male, age 76, right hemisphere 80.1
2224 Female, age 72, unknown 79.5
2273 Male, age 74, both hemispheres 78.3
2407 Male, age 75, both hemispheres 78.0
2825 Male, age 18, unknown 77.7
Red nucleus
nTPM: 84.0
1821 Female, age 72, unknown 88.9
2503 Female, age 72, unknown 85.6
1954 Female, age 42, unknown 85.0
2725 Female, age 75, unknown 84.7
2823 Male, age 76, right hemisphere 84.2
2785 Male, age 18, unknown 84.0
1904 Male, age 53, unknown 83.2
1865 Male, age 51, unknown 82.9
2769 Male, age 72, unknown 82.9
2588 Male, age 74, left hemisphere 82.8
2227 Male, age 72, unknown 82.1
2584 Male, age 75, left hemisphere 81.7
Substantia nigra
nTPM: 86.3
1916 Female, age 42, unknown 95.0
1889 Female, age 72, unknown 91.6
1851 Male, age 51, unknown 87.7
1941 Male, age 53, unknown 86.0
2583 Male, age 75, right hemisphere 85.9
2665 Male, age 74, both hemispheres 85.9
2241 Male, age 72, unknown 85.1
2590 Female, age 75, unknown 84.1
2699 Male, age 18, unknown 83.0
2409 Female, age 72, unknown 78.8
Superior colliculus
nTPM: 82.2
1796 Male, age 53, unknown 86.7
2087 Female, age 72, unknown 85.5
2261 Male, age 18, unknown 85.4
2668 Female, age 75, unknown 83.0
1895 Male, age 76, right hemisphere 82.3
1913 Female, age 42, unknown 81.5
1995 Male, age 72, unknown 80.7
2587 Male, age 74, left hemisphere 79.8
2664 Male, age 75, both hemispheres 78.8
1839 Male, age 51, unknown 78.5
Ventral tegmental area
nTPM: 83.0
2410 Female, age 72, unknown 90.1
1915 Female, age 42, unknown 86.9
1942 Male, age 51, unknown 83.4
2218 Male, age 76, both hemispheres 82.4
2021 Male, age 53, unknown 78.3
2223 Female, age 72, unknown 76.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 86.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.8
Samples: 139

Max nTPM: 158.4
Min nTPM: 2.9
Std nTPM: 31.5
Median nTPM: 88.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 158.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 153.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 151.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 148.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 145.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 140.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 140.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 138.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 136.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 134.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 133.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.1
FF:10158-103A5 76 years, female 3.1

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The Human Protein Atlas

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