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A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.
Protein expressioni
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
180.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 148.9
1898
Male, age 80, left hemisphere
182.8
2148
Female, age 91, left hemisphere
153.3
2621
Female, age 67, right hemisphere
150.0
2529
Female, age 94, left hemisphere
144.2
1855
Male, age 76, left hemisphere
135.4
1911
Female, age 85, right hemisphere
127.7
Dentate gyrus nTPM: 152.1
1927
Female, age 91, both hemispheres
179.8
2530
Female, age 94, left hemisphere
161.1
2010
Male, age 76, both hemispheres
149.0
2528
Male, age 74, both hemispheres
144.6
2531
Female, age 67, both hemispheres
141.5
2246
Female, age 85, both hemispheres
136.4
Entorhinal gyrus nTPM: 162.1
2764
Male, age 80, right hemisphere
184.4
1938
Female, age 85, left hemisphere
179.3
2613
Female, age 94, left hemisphere
167.0
1787
Male, age 76, left hemisphere
159.8
2117
Female, age 91, right hemisphere
154.9
2686
Male, age 75, right hemisphere
127.2
Hippocampus, CA1 nTPM: 146.2
2749
Male, age 80, left hemisphere
165.5
1873
Female, age 85, both hemispheres
159.3
2045
Male, age 76, both hemispheres
151.6
2527
Male, age 74, both hemispheres
130.8
2082
Female, age 91, right hemisphere
123.6
Hippocampus, CA2 nTPM: 141.5
1963
Male, age 80, left hemisphere
161.5
2437
Female, age 94, left hemisphere
148.6
1892
Male, age 76, both hemispheres
147.8
1940
Female, age 85, left hemisphere
135.7
2249
Male, age 74, both hemispheres
131.6
2113
Female, age 91, right hemisphere
123.6
Hippocampus, CA3 nTPM: 139.5
2620
Female, age 94, left hemisphere
169.3
2861
Female, age 67, both hemispheres
156.5
2137
Male, age 80, left hemisphere
133.6
1891
Female, age 85, both hemispheres
132.0
1867
Male, age 76, both hemispheres
129.0
2436
Male, age 74, both hemispheres
116.3
Parahippocampal cortex nTPM: 145.5
1933
Female, age 85, both hemispheres
166.2
1990
Female, age 91, right hemisphere
160.3
1850
Male, age 80, both hemispheres
159.3
2245
Female, age 91, both hemispheres
155.1
2250
Female, age 67, right hemisphere
153.6
2532
Female, age 72, left hemisphere
144.0
2693
Female, age 94, both hemispheres
134.7
2018
Male, age 76, both hemispheres
132.3
2622
Female, age 67, right hemisphere
132.1
2692
Male, age 74, both hemispheres
117.3
Perirhinal gyrus nTPM: 180.3
1847
Female, age 91, left hemisphere
218.8
1794
Male, age 80, right hemisphere
188.5
2521
Female, age 94, right hemisphere
173.6
1841
Female, age 85, right hemisphere
169.2
2848
Male, age 76, right hemisphere
151.5
Subiculum nTPM: 131.6
1977
Female, age 85, both hemispheres
161.7
2729
Female, age 91, right hemisphere
139.9
1901
Male, age 80, both hemispheres
131.8
2619
Male, age 74, both hemispheres
125.6
2042
Male, age 76, both hemispheres
118.3
2438
Female, age 94, left hemisphere
112.5
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
