BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:192.7 nTPM
HPA:192.7 nTPM
FANTOM5:231.4 Scaled Tags Per Million
Mouse:3.1 nTPM
Allen mouse:19.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 192.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 110.1
1857 Female, age 85, left hemisphere 124.3
1781 Male, age 74, unknown 119.5
2290 Female, age 72, unknown 115.6
1854 Male, age 80, left hemisphere 111.4
2288 Male, age 75, left hemisphere 105.2
2289 Male, age 61, right hemisphere 103.7
2481 Female, age 94, left hemisphere 101.4
2846 Female, age 79, unknown 99.8
Claustrum
nTPM: 119.0
2284 Female, age 91, both hemispheres 133.7
2198 Male, age 80, both hemispheres 131.6
2491 Male, age 75, both hemispheres 129.8
2645 Female, age 72, unknown 121.4
2568 Male, age 61, both hemispheres 119.8
1956 Male, age 74, unknown 114.0
2392 Female, age 94, both hemispheres 113.2
2196 Female, age 79, unknown 103.9
2292 Female, age 85, both hemispheres 103.3
Globus pallidus, externus
nTPM: 104.6
2395 Male, age 75, both hemispheres 144.8
1996 Male, age 80, right hemisphere 109.0
2772 Female, age 79, unknown 98.8
2646 Male, age 61, right hemisphere 89.8
2567 Female, age 72, unknown 80.8
Globus pallidus, internus
nTPM: 97.0
2287 Male, age 75, right hemisphere 120.2
2483 Female, age 94, right hemisphere 107.8
2037 Male, age 80, right hemisphere 96.3
2778 Female, age 91, both hemispheres 94.4
2566 Female, age 72, unknown 93.3
2111 Female, age 85, right hemisphere 84.5
1818 Male, age 74, unknown 82.8
Nucleus accumbens
nTPM: 117.9
1856 Female, age 91, right hemisphere 146.4
2732 Male, age 80, right hemisphere 132.7
2698 Female, age 72, unknown 123.4
1806 Female, age 85, left hemisphere 121.9
1783 Male, age 74, unknown 115.3
2824 Male, age 61, right hemisphere 112.0
2286 Male, age 75, left hemisphere 104.8
2391 Female, age 94, left hemisphere 87.1
Nucleus basalis of Meynert
nTPM: 105.2
2393 Male, age 80, right hemisphere 111.1
2821 Male, age 75, both hemispheres 107.9
2484 Female, age 94, left hemisphere 105.4
2569 Male, age 61, both hemispheres 96.4
Nucleus of the diagonal band
nTPM: 192.7
1812 Female, age 91, both hemispheres 214.5
2775 Male, age 80, right hemisphere 210.7
2195 Female, age 85, both hemispheres 193.6
2029 Male, age 61, right hemisphere 182.3
1979 Male, age 74, unknown 162.5
Olfactory tubercle
nTPM: 164.4
1998 Female, age 91, both hemispheres 187.7
1846 Male, age 80, right hemisphere 177.9
2487 Female, age 94, left hemisphere 170.3
2856 Male, age 75, right hemisphere 121.9
Putamen
nTPM: 105.5
1937 Female, age 91, right hemisphere 127.5
1838 Male, age 80, right hemisphere 112.7
2647 Male, age 75, left hemisphere 110.8
2466 Female, age 79, unknown 99.8
1829 Male, age 74, unknown 98.2
2482 Female, age 94, left hemisphere 95.6
2489 Female, age 72, unknown 93.6
Septal nuclei
nTPM: 173.6
2031 Female, age 72, unknown 224.7
1960 Male, age 74, unknown 202.2
2009 Female, age 91, both hemispheres 188.9
2629 Female, age 94, right hemisphere 175.9
2059 Female, age 85, both hemispheres 167.0
2394 Male, age 61, left hemisphere 130.4
2199 Male, age 80, right hemisphere 125.9

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 231.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 156.2
FF:10164-103B2 76 years, female 156.2
Globus pallidus
Scaled Tags Per Million: 154.0
FF:10175-103C4 60 years, female 183.9
FF:10161-103A8 76 years, female 124.1
Nucleus accumbens
Scaled Tags Per Million: 222.0
FF:10037-101F1 23-56 years, mixed 222.0
Putamen
Scaled Tags Per Million: 231.4
FF:10176-103C5 60 years, female 231.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.0
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.4
Sample A Male 1.4
Sample B Male 2.5
Sample C Female 1.6
Sample D Female 2.3
Septum
nTPM: 3.1
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.2
Sample A Male 2.2
Sample B Male 3.5
Sample C Female 3.4
Sample D Female 3.2
Ventral forebrain
nTPM: 1.8
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.6
Sample A Male 1.8
Sample B Male 1.6
Sample C Female 1.6
Sample D Female 2.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 19.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 18.4
69444795 Antisense, RP_050414_04_F06, Mouse strain C57BL/6J (56 days, male) 18.4
Pallidum
Expression energy: 19.2
69444795 Antisense, RP_050414_04_F06, Mouse strain C57BL/6J (56 days, male) 19.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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