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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:8854.8 nTPM
HPA:8854.8 nTPM
FANTOM5:0.8 Scaled Tags Per Million
Mouse:0.0 nTPM

PONS AND MEDULLA - Annotated protein expression
Pending normal tissue analysis

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 8854.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 8854.8
1984 Male, age 76, both hemispheres 12652.8
2301 Female, age 85, both hemispheres 10775.7
2188 Female, age 91, both hemispheres 9471.6
2090 Male, age 80, both hemispheres 2519.0
Area postrema
nTPM: 327.7
2306 Male, age 80, both hemispheres 629.6
2799 Male, age 61, both hemispheres 353.6
2054 Male, age 76, both hemispheres 0.0
Cuneate nuclei
nTPM: 1712.5
2376 Male, age 61, both hemispheres 4113.9
2131 Male, age 76, both hemispheres 646.8
2381 Male, age 80, both hemispheres 376.9
Dorsal cochlear nucleus
nTPM: 1661.7
2187 Female, age 91, both hemispheres 2702.5
2058 Male, age 76, both hemispheres 1672.7
2378 Male, age 80, both hemispheres 1539.4
2802 Male, age 74, right hemisphere 1357.9
2370 Male, age 61, both hemispheres 1036.2
Dorsal medullary reticular nucleus
nTPM: 1194.8
2088 Male, age 76, both hemispheres 1911.3
2373 Male, age 61, both hemispheres 1673.2
2040 Female, age 85, both hemispheres 0.0
Dorsal motor vagal complex
nTPM: 1499.3
2797 Male, age 61, both hemispheres 4997.6
2807 Female, age 85, both hemispheres 2664.7
2185 Male, age 76, both hemispheres 1797.5
2000 Male, age 74, unknown 979.0
2133 Female, age 91, both hemispheres 879.3
2643 Male, age 74, both hemispheres 676.8
2813 Female, age 72, unknown 0.0
2844 Male, age 55, unknown 0.0
Dorsal tegmental nucleus
nTPM: 1358.6
2326 Male, age 74, both hemispheres 3249.1
2083 Male, age 80, both hemispheres 1677.7
1936 Male, age 76, left hemisphere 507.5
2358 Male, age 61, both hemispheres 0.0
Dorsolateral tegmental area
nTPM: 433.9
2654 Male, age 80, both hemispheres 1667.0
2337 Male, age 61, both hemispheres 433.7
2751 Female, age 85, both hemispheres 68.7
2141 Male, age 76, both hemispheres 0.0
2360 Male, age 74, both hemispheres 0.0
Gigantocellular reticular nuclei, medullary
nTPM: 3228.2
2314 Male, age 61, both hemispheres 6950.3
2310 Male, age 80, both hemispheres 5213.1
2387 Female, age 91, both hemispheres 4053.7
2022 Male, age 76, right hemisphere 3152.2
1876 Female, age 85, both hemispheres 0.0
2462 Male, age 74, both hemispheres 0.0
Gigantocellular reticular nuclei, pars
nTPM: 4300.7
2330 Male, age 80, both hemispheres 6819.6
2168 Male, age 76, both hemispheres 4641.1
2706 Male, age 80, both hemispheres 4477.0
2336 Male, age 61, both hemispheres 4404.9
2084 Female, age 85, both hemispheres 1160.9
Inferior olive
nTPM: 2453.0
2628 Female, age 91, both hemispheres 4132.0
2085 Female, age 85, both hemispheres 2603.6
2379 Male, age 80, both hemispheres 2166.6
2178 Male, age 61, both hemispheres 2156.2
2563 Male, age 74, both hemispheres 1206.4
Kolliker-Fuse nucleus
nTPM: 3050.2
2793 Female, age 91, left hemisphere 8156.1
2163 Male, age 80, both hemispheres 994.6
2315 Male, age 76, right hemisphere 0.0
Lateral lemniscal nuclei
nTPM: 4240.6
2320 Female, age 91, left hemisphere 8881.7
2169 Male, age 76, both hemispheres 4818.9
2036 Male, age 80, both hemispheres 3643.0
2453 Male, age 74, right hemisphere 3280.5
2746 Female, age 85, left hemisphere 578.9
Lateral medullary reticular nucleus
nTPM: 894.2
2804 Female, age 91, both hemispheres 1914.2
2374 Male, age 61, both hemispheres 1662.7
2190 Female, age 85, both hemispheres 1087.1
2305 Male, age 74, both hemispheres 701.4
2044 Male, age 76, both hemispheres 0.0
2852 Male, age 80, both hemispheres 0.0
Lateral parabrachial nucleus
nTPM: 3229.3
2792 Male, age 76, both hemispheres 9258.0
2139 Female, age 85, right hemisphere 2186.9
2013 Male, age 80, both hemispheres 825.4
2790 Male, age 61, both hemispheres 647.0
Lateral vestibular nucleus
nTPM: 2094.9
2311 Male, age 80, both hemispheres 3698.5
2184 Male, age 76, both hemispheres 491.3
Locus coeruleus
nTPM: 156.2
2720 Male, age 74, both hemispheres 1093.6
1980 Male, age 76, both hemispheres 0.0
2014 Male, age 55, unknown 0.0
2123 Female, age 91, both hemispheres 0.0
2162 Male, age 80, both hemispheres 0.0
2317 Female, age 72, unknown 0.0
2788 Male, age 74, unknown 0.0
Medial olivary nucleus
nTPM: 920.6
2138 Female, age 91, both hemispheres 2009.0
2851 Male, age 80, both hemispheres 1012.3
1962 Male, age 76, both hemispheres 659.2
1943 Male, age 61, both hemispheres 2.0
Medial parabrachial nucleus
nTPM: 2188.2
2463 Female, age 85, right hemisphere 4800.7
2170 Female, age 91, both hemispheres 2367.5
2854 Male, age 80, both hemispheres 1481.5
2156 Male, age 61, both hemispheres 1409.8
2786 Male, age 76, both hemispheres 881.3
Medial periolivary nuclei
nTPM: 3596.0
2458 Female, age 91, both hemispheres 5824.2
2063 Male, age 76, both hemispheres 5010.7
2171 Female, age 85, both hemispheres 4788.6
2081 Male, age 80, both hemispheres 1533.0
2791 Male, age 74, right hemisphere 823.6
Medial vestibular nucleus
nTPM: 1643.5
2803 Female, age 91, both hemispheres 4589.7
2093 Male, age 80, both hemispheres 3217.7
2624 Male, age 61, both hemispheres 2054.1
2134 Male, age 76, both hemispheres 0.0
2743 Female, age 85, both hemispheres 0.0
2801 Male, age 74, both hemispheres 0.0
Motor facial nucleus
nTPM: 4711.6
2697 Female, age 85, both hemispheres 8911.3
2327 Male, age 80, both hemispheres 6638.2
2062 Male, age 76, both hemispheres 4598.4
2795 Female, age 91, both hemispheres 4331.7
2126 Male, age 61, both hemispheres 2253.6
2365 Male, age 74, right hemisphere 1536.4
Motor hypoglossal nucleus
nTPM: 1243.1
2132 Female, age 85, both hemispheres 3786.9
2125 Female, age 91, both hemispheres 1675.1
2182 Male, age 80, both hemispheres 753.5
2277 Male, age 76, both hemispheres 0.0
2461 Male, age 61, both hemispheres 0.0
Motor trigeminal nucleus
nTPM: 3362.1
2321 Female, age 91, both hemispheres 5092.3
2079 Male, age 80, both hemispheres 4607.5
2560 Male, age 74, both hemispheres 2395.3
2309 Male, age 76, both hemispheres 2387.0
2335 Male, age 61, both hemispheres 2328.5
Nuclei of the trapezoid body
nTPM: 4307.7
2368 Female, age 91, both hemispheres 6225.4
1983 Male, age 76, both hemispheres 4378.6
2159 Male, age 61, both hemispheres 4256.3
2166 Male, age 80, both hemispheres 3504.6
2735 Female, age 85, both hemispheres 3173.4
Nucleus ambiguus
nTPM: 472.6
2071 Male, age 76, both hemispheres 945.3
2096 Female, age 85, both hemispheres 0.0
Nucleus cuneatus
nTPM: 1448.3
2805 Female, age 91, both hemispheres 3933.8
2100 Male, age 76, both hemispheres 2216.7
2808 Female, age 85, both hemispheres 1380.6
2562 Male, age 61, both hemispheres 1077.6
2380 Male, age 80, both hemispheres 81.3
2564 Male, age 74, both hemispheres 0.0
Nucleus gracilis
nTPM: 1022.5
2299 Female, age 85, both hemispheres 2951.6
2382 Male, age 80, both hemispheres 115.9
2627 Male, age 74, both hemispheres 0.0
Nucleus raphe magnus
nTPM: 3527.4
2328 Male, age 80, both hemispheres 5920.6
2455 Male, age 74, both hemispheres 4257.5
2172 Female, age 85, both hemispheres 4042.0
2459 Female, age 91, both hemispheres 3796.8
2160 Male, age 61, both hemispheres 2032.8
2051 Male, age 76, both hemispheres 1114.7
Nucleus raphe obscurus
nTPM: 2528.9
2845 Female, age 85, midline 3992.5
2800 Male, age 61, midline 3126.2
2142 Male, age 76, midline 468.1
Nucleus raphe pallidus
nTPM: 716.6
2145 Male, age 76, midline 2149.9
1924 Male, age 61, midline 0.0
2183 Male, age 80, midline 0.0
Nucleus tractus solitarii
nTPM: 528.5
2191 Female, age 85, both hemispheres 1240.0
2144 Female, age 91, right hemisphere 874.2
2307 Male, age 80, both hemispheres 0.0
2656 Male, age 76, both hemispheres 0.0
Paramedian reticular nucleus
nTPM: 939.8
2313 Male, age 61, both hemispheres 1928.1
2050 Female, age 85, both hemispheres 1074.6
2052 Male, age 76, both hemispheres 756.7
2057 Male, age 80, both hemispheres 0.0
Parvicellular reticular nuclei
nTPM: 1469.3
2095 Male, age 76, both hemispheres 2413.3
2558 Male, age 74, both hemispheres 1614.1
2119 Male, age 80, both hemispheres 380.6
Parvicellular reticular nuclei, medullary
nTPM: 1302.1
2181 Male, age 80, left hemisphere 1648.9
2189 Female, age 91, both hemispheres 1244.2
2091 Female, age 85, both hemispheres 1013.3
Peritrigeminal nucleus
nTPM: 692.2
2136 Male, age 76, both hemispheres 1095.0
2179 Male, age 61, both hemispheres 981.6
2067 Female, age 85, both hemispheres 0.0
Pontine nuclei
nTPM: 3294.6
2319 Female, age 91, both hemispheres 9265.4
1968 Male, age 76, left hemisphere 3513.8
2109 Female, age 72, unknown 3126.2
1863 Male, age 55, unknown 2802.7
2454 Male, age 74, left hemisphere 2644.5
2115 Male, age 80, left hemisphere 2622.5
2787 Female, age 85, both hemispheres 2093.9
2727 Male, age 61, right hemisphere 287.8
Pontine raphe nucleus
nTPM: 2046.3
2122 Female, age 85, midline 4092.6
2853 Male, age 76, midline 0.0
Posteroventral cochlear nucleus
nTPM: 6210.2
2135 Female, age 91, both hemispheres 13541.4
2341 Male, age 80, both hemispheres 11532.4
2371 Male, age 61, both hemispheres 4240.0
2752 Female, age 85, both hemispheres 1737.4
2070 Male, age 76, both hemispheres 0.0
Prepositus hypoglossal nucleus
nTPM: 518.4
2855 Female, age 85, right hemisphere 1036.9
2086 Male, age 80, both hemispheres 0.0
Principal sensory trigeminal nucleus
nTPM: 3357.2
2367 Female, age 91, left hemisphere 4080.6
2158 Male, age 61, both hemispheres 4015.7
2324 Male, age 76, both hemispheres 3164.9
2008 Male, age 80, left hemisphere 2167.7
Reticular pontine nucleus, caudal
nTPM: 3973.9
2332 Male, age 80, right hemisphere 4756.2
2092 Male, age 76, both hemispheres 4719.9
2457 Female, age 91, both hemispheres 4422.2
2559 Male, age 74, both hemispheres 1997.1
Reticular pontine nucleus, oral
nTPM: 2654.2
2366 Female, age 91, both hemispheres 10753.2
2012 Female, age 85, both hemispheres 1333.5
2167 Male, age 76, both hemispheres 784.1
1939 Male, age 80, both hemispheres 400.4
2361 Male, age 74, both hemispheres 0.0
Reticulotegmental nucleus
nTPM: 3027.2
2322 Female, age 91, both hemispheres 4063.6
2325 Male, age 76, both hemispheres 2945.7
2452 Male, age 74, both hemispheres 2929.8
2333 Male, age 80, both hemispheres 2169.8
Spinal trigeminal nucleus, caudal
nTPM: 1602.7
2312 Male, age 61, both hemispheres 3971.0
2308 Male, age 80, both hemispheres 2432.8
2447 Male, age 76, both hemispheres 932.2
2390 Female, age 91, both hemispheres 677.7
2642 Male, age 74, both hemispheres 0.0
Spinal trigeminal nucleus, interpolar
nTPM: 895.5
2389 Female, age 91, both hemispheres 2310.9
2625 Male, age 61, both hemispheres 1331.3
2033 Male, age 80, both hemispheres 509.3
2386 Female, age 85, both hemispheres 326.1
2066 Male, age 76, right hemisphere 0.0
Spinal trigeminal nucleus, oral
nTPM: 2716.5
2737 Female, age 85, both hemispheres 6329.4
1978 Male, age 76, both hemispheres 1081.7
2164 Male, age 80, both hemispheres 738.3
Spinal vestibular nucleus
nTPM: 3380.0
2796 Male, age 61, both hemispheres 6191.5
2806 Female, age 85, both hemispheres 4780.0
2384 Male, age 74, both hemispheres 4246.8
2186 Female, age 91, both hemispheres 2491.7
2780 Male, age 80, both hemispheres 1346.3
2748 Male, age 76, both hemispheres 1224.0
Subcoeruleus area
nTPM: 1857.2
2089 Male, age 76, left hemisphere 4232.4
2451 Male, age 74, both hemispheres 2832.3
1958 Male, age 80, both hemispheres 1360.7
2323 Female, age 91, left hemisphere 761.2
2369 Female, age 85, left hemisphere 99.5
Superior olive
nTPM: 4639.8
2020 Male, age 76, both hemispheres 7707.7
2561 Female, age 91, both hemispheres 6546.9
2329 Male, age 80, right hemisphere 5308.3
1875 Female, age 85, both hemispheres 2479.4
2364 Male, age 74, right hemisphere 1156.6
Superior vestibular nucleus
nTPM: 740.9
2015 Male, age 80, both hemispheres 1551.2
2061 Male, age 76, both hemispheres 671.5
2383 Male, age 74, both hemispheres 0.0
Ventral medullary reticular nucleus
nTPM: 1540.4
2372 Male, age 61, both hemispheres 3080.8
2060 Male, age 76, both hemispheres 0.0
Ventral periolivary nuclei
nTPM: 5998.6
2023 Male, age 76, both hemispheres 6888.2
2794 Female, age 91, left hemisphere 6819.3
2130 Female, age 85, both hemispheres 5277.3
2165 Male, age 80, both hemispheres 5009.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 2103.6
2302 Female, age 91, both hemispheres 7582.8
2180 Male, age 61, both hemispheres 1669.9
2118 Male, age 80, both hemispheres 1265.4
1986 Male, age 76, both hemispheres 0.0
2741 Female, age 85, both hemispheres 0.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 2598.8
2456 Female, age 91, both hemispheres 4901.0
1959 Male, age 76, both hemispheres 4823.8
2161 Male, age 80, both hemispheres 2590.0
2449 Male, age 74, both hemispheres 2323.1
2840 Female, age 85, both hemispheres 955.0
2359 Male, age 61, both hemispheres 0.0

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 0.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 0.8
FF:10165-103B3 76 years, female 1.3
FF:10182-103D2 60 years, female 0.3
Medulla oblongata
Scaled Tags Per Million: 0.3
FF:10155-103A2 76 years, female 0.8
FF:10038-101F2 18-64 years, mixed 0.3
FF:10174-103C3 60 years, female 0.0
Pons
Scaled Tags Per Million: 0.7
FF:10033-101E6 18-54 years, mixed 0.7

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.0
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

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