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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:85.3 nTPM
HPA:85.3 nTPM
GTEx:93.9 nTPM
FANTOM5:56.2 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 85.3
Sample id Sample description nTPM
Amygdala
nTPM: 85.3
2695 Female, age 67, right hemisphere 89.6
2814 Male, age 76, right hemisphere 86.3
2514 Male, age 75, right hemisphere 85.2
1987 Female, age 91, left hemisphere 83.9
2517 Female, age 94, left hemisphere 81.4
Basal amygdala
nTPM: 84.7
2609 Male, age 75, right hemisphere 86.7
2243 Female, age 91, right hemisphere 86.6
1955 Male, age 76, both hemispheres 86.2
2685 Female, age 94, left hemisphere 83.9
2110 Male, age 80, left hemisphere 83.8
2827 Female, age 67, right hemisphere 81.0
Central amygdala
nTPM: 84.4
2701 Female, age 91, right hemisphere 85.5
1905 Male, age 76, both hemispheres 85.3
2515 Male, age 75, right hemisphere 85.2
2826 Female, age 94, left hemisphere 83.1
2239 Male, age 80, left hemisphere 82.9
Corticomedial amygdala
nTPM: 83.9
2829 Male, age 80, left hemisphere 85.0
2242 Female, age 91, right hemisphere 84.9
2428 Male, age 75, right hemisphere 84.5
2240 Male, age 76, both hemispheres 83.4
2429 Female, age 94, left hemisphere 82.8
2535 Female, age 67, right hemisphere 82.6
Lateral amygdala
nTPM: 83.2
2516 Male, age 75, right hemisphere 85.4
1883 Male, age 76, both hemispheres 84.3
2255 Female, age 91, right hemisphere 84.0
2256 Male, age 80, left hemisphere 82.6
2534 Female, age 94, left hemisphere 82.3
2830 Female, age 67, right hemisphere 80.7
Stria terminalis, bed nucleus
nTPM: 82.8
2201 Male, age 74, unknown 86.2
1974 Female, age 91, both hemispheres 81.5
2486 Female, age 94, both hemispheres 80.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 93.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 93.9
Samples: 152

Max nTPM: 227.6
Min nTPM: 44.8
Std nTPM: 28.7
Median nTPM: 89.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 227.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 208.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 204.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 200.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 175.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 163.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 163.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 153.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 143.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 142.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 141.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 127.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 121.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 118.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 116.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 115.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 115.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 114.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 112.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 111.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 111.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 110.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 110.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 109.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 108.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 107.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 106.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 106.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 106.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 105.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 105.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 105.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 105.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 104.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 104.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 104.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 103.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 103.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 103.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 103.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 102.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 102.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 102.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 101.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 101.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 100.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 100.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 100.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 100.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 100.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 99.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 99.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 98.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 97.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 97.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 97.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 96.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 96.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 95.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 95.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 95.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 94.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 94.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 93.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 93.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 93.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 93.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 93.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 93.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 93.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 92.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 92.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 92.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 91.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 90.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 90.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 89.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 89.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 89.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 88.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 88.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 87.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 87.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 87.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 87.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 86.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 86.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 85.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 85.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 85.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 84.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 84.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 84.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 83.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 83.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 83.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 82.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 82.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 82.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 81.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 80.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 80.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 80.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 79.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 78.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 78.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 78.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 78.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 78.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 77.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 76.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 76.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 76.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 76.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 76.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 75.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 75.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 75.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 75.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 74.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 74.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 74.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 73.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 73.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 72.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 72.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 71.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 71.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 70.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 70.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 68.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 68.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 68.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 66.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 65.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 64.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 64.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 64.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 64.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 64.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 64.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 63.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 63.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 62.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 62.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 61.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 59.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 58.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 57.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 55.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 47.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 44.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 56.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 56.2
FF:10151-102I7 76 years, female 56.2

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