BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:87.4 nTPM
HPA:87.4 nTPM
GTEx:89.4 nTPM
FANTOM5:68.1 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 87.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 85.6
2290 Female, age 72, unknown 87.6
1857 Female, age 85, left hemisphere 87.3
2846 Female, age 79, unknown 85.8
1854 Male, age 80, left hemisphere 85.5
2481 Female, age 94, left hemisphere 85.3
2289 Male, age 61, right hemisphere 85.2
2288 Male, age 75, left hemisphere 84.5
1781 Male, age 74, unknown 83.7
Claustrum
nTPM: 82.4
2198 Male, age 80, both hemispheres 84.5
2196 Female, age 79, unknown 83.8
1956 Male, age 74, unknown 83.2
2292 Female, age 85, both hemispheres 82.7
2645 Female, age 72, unknown 82.5
2568 Male, age 61, both hemispheres 81.7
2491 Male, age 75, both hemispheres 81.1
2284 Female, age 91, both hemispheres 81.0
2392 Female, age 94, both hemispheres 80.9
Globus pallidus, externus
nTPM: 87.4
1996 Male, age 80, right hemisphere 91.8
2646 Male, age 61, right hemisphere 89.1
2772 Female, age 79, unknown 88.1
2395 Male, age 75, both hemispheres 84.5
2567 Female, age 72, unknown 83.6
Globus pallidus, internus
nTPM: 86.4
2037 Male, age 80, right hemisphere 88.8
1818 Male, age 74, unknown 88.0
2287 Male, age 75, right hemisphere 87.2
2778 Female, age 91, both hemispheres 86.8
2111 Female, age 85, right hemisphere 85.0
2483 Female, age 94, right hemisphere 84.9
2566 Female, age 72, unknown 83.9
Nucleus accumbens
nTPM: 85.0
2698 Female, age 72, unknown 88.7
1806 Female, age 85, left hemisphere 85.8
2286 Male, age 75, left hemisphere 85.8
1856 Female, age 91, right hemisphere 85.2
2732 Male, age 80, right hemisphere 84.7
2391 Female, age 94, left hemisphere 84.3
1783 Male, age 74, unknown 83.1
2824 Male, age 61, right hemisphere 82.3
Nucleus basalis of Meynert
nTPM: 84.8
2569 Male, age 61, both hemispheres 88.7
2484 Female, age 94, left hemisphere 84.4
2393 Male, age 80, right hemisphere 83.9
2821 Male, age 75, both hemispheres 82.3
Nucleus of the diagonal band
nTPM: 82.2
1979 Male, age 74, unknown 85.2
2195 Female, age 85, both hemispheres 82.9
2775 Male, age 80, right hemisphere 81.8
1812 Female, age 91, both hemispheres 81.5
2029 Male, age 61, right hemisphere 79.6
Olfactory tubercle
nTPM: 81.4
1846 Male, age 80, right hemisphere 82.6
2856 Male, age 75, right hemisphere 81.4
1998 Female, age 91, both hemispheres 81.0
2487 Female, age 94, left hemisphere 80.5
Putamen
nTPM: 83.1
2482 Female, age 94, left hemisphere 85.7
2489 Female, age 72, unknown 83.8
1937 Female, age 91, right hemisphere 83.0
2466 Female, age 79, unknown 82.8
1829 Male, age 74, unknown 82.4
2647 Male, age 75, left hemisphere 82.2
1838 Male, age 80, right hemisphere 81.7
Septal nuclei
nTPM: 83.7
2199 Male, age 80, right hemisphere 86.7
2394 Male, age 61, left hemisphere 84.4
2629 Female, age 94, right hemisphere 84.4
2059 Female, age 85, both hemispheres 84.2
1960 Male, age 74, unknown 83.4
2031 Female, age 72, unknown 83.1
2009 Female, age 91, both hemispheres 79.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 89.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 82.9
Samples: 246

Max nTPM: 204.6
Min nTPM: 28.0
Std nTPM: 22.2
Median nTPM: 79.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 204.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 167.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 156.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 142.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 138.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 133.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 133.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 131.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 130.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 129.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 128.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 89.4
Samples: 246

Max nTPM: 380.2
Min nTPM: 39.3
Std nTPM: 34.5
Median nTPM: 81.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 380.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 215.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 189.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 189.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 181.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 181.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 169.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 167.6
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 165.0
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 153.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 153.1
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Brain - Putamen (basal ganglia)
Average nTPM: 87.7
Samples: 205

Max nTPM: 214.5
Min nTPM: 41.5
Std nTPM: 21.0
Median nTPM: 84.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 214.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 155.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 141.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 132.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 131.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 130.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 128.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 128.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 127.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 127.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 126.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 49.1
FF:10164-103B2 76 years, female 49.1
Globus pallidus
Scaled Tags Per Million: 68.1
FF:10175-103C4 60 years, female 78.9
FF:10161-103A8 76 years, female 57.4
Nucleus accumbens
Scaled Tags Per Million: 25.3
FF:10037-101F1 23-56 years, mixed 25.3
Putamen
Scaled Tags Per Million: 54.0
FF:10176-103C5 60 years, female 54.0

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