MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:252.8 nTPM
HPA:252.8 nTPM
GTEx:172.0 nTPM
FANTOM5:72.0 Scaled Tags Per Million
Pig:146.3 nTPM
Mouse:17.2 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 252.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 204.1
2666 Male, age 74, left hemisphere 242.4
2586 Male, age 75, left hemisphere 238.7
1827 Male, age 72, unknown 217.5
1870 Female, age 42, unknown 206.2
2411 Female, age 72, unknown 200.0
2828 Female, age 72, unknown 198.8
1833 Male, age 53, unknown 190.8
2219 Male, age 76, both hemispheres 189.6
1830 Male, age 51, unknown 184.7
2019 Male, age 18, unknown 172.2
Dorsal raphe nucleus
nTPM: 222.8
2298 Female, age 72, unknown 261.4
2047 Male, age 72, unknown 245.5
2750 Male, age 76, both hemispheres 214.6
1828 Male, age 53, unknown 203.6
2016 Female, age 72, unknown 188.9
Inferior colliculus
nTPM: 192.4
2849 Male, age 72, unknown 200.1
2097 Female, age 72, unknown 196.1
1848 Female, age 42, unknown 193.8
1890 Male, age 53, unknown 179.5
Median raphe nucleus
nTPM: 252.8
2220 Male, age 76, midline 252.8
Pedunculopontine tegmental nucleus
nTPM: 205.7
2334 Male, age 80, both hemispheres 228.8
1921 Female, age 85, both hemispheres 210.8
2338 Male, age 61, both hemispheres 177.6
Periaquaductal grey, anterior
nTPM: 229.2
1947 Male, age 18, unknown 241.2
1795 Male, age 51, unknown 236.4
2502 Female, age 75, unknown 209.9
Periaquaductal grey, dorsal
nTPM: 208.9
1840 Male, age 53, unknown 230.3
2850 Male, age 76, both hemispheres 219.0
2464 Female, age 72, unknown 196.6
1831 Male, age 72, unknown 189.8
Periaquaductal grey, lateral
nTPM: 196.4
2140 Male, age 76, both hemispheres 205.2
2053 Male, age 18, unknown 197.9
2272 Male, age 74, both hemispheres 186.0
Pretectal area
nTPM: 204.6
2224 Female, age 72, unknown 241.4
2825 Male, age 18, unknown 223.8
1816 Male, age 51, unknown 216.8
2007 Male, age 72, unknown 211.3
1817 Female, age 42, unknown 208.4
1944 Female, age 72, unknown 204.4
2667 Female, age 75, unknown 203.5
1815 Male, age 53, unknown 197.8
2273 Male, age 74, both hemispheres 184.4
2407 Male, age 75, both hemispheres 184.4
2316 Male, age 76, right hemisphere 174.4
Red nucleus
nTPM: 175.3
2584 Male, age 75, left hemisphere 205.7
1954 Female, age 42, unknown 179.7
2785 Male, age 18, unknown 178.0
2725 Female, age 75, unknown 177.8
1821 Female, age 72, unknown 177.5
2227 Male, age 72, unknown 174.3
2769 Male, age 72, unknown 172.6
1904 Male, age 53, unknown 171.4
2588 Male, age 74, left hemisphere 169.1
2503 Female, age 72, unknown 168.9
1865 Male, age 51, unknown 166.3
2823 Male, age 76, right hemisphere 161.8
Substantia nigra
nTPM: 203.3
1916 Female, age 42, unknown 228.0
1851 Male, age 51, unknown 213.8
2665 Male, age 74, both hemispheres 213.2
1941 Male, age 53, unknown 212.9
2241 Male, age 72, unknown 210.4
1889 Female, age 72, unknown 204.8
2583 Male, age 75, right hemisphere 197.4
2699 Male, age 18, unknown 191.4
2409 Female, age 72, unknown 183.6
2590 Female, age 75, unknown 177.8
Superior colliculus
nTPM: 200.0
2668 Female, age 75, unknown 242.2
2664 Male, age 75, both hemispheres 227.1
1796 Male, age 53, unknown 215.7
2261 Male, age 18, unknown 209.2
1839 Male, age 51, unknown 201.2
2087 Female, age 72, unknown 197.2
2587 Male, age 74, left hemisphere 186.6
1895 Male, age 76, right hemisphere 180.5
1913 Female, age 42, unknown 171.8
1995 Male, age 72, unknown 168.3
Ventral tegmental area
nTPM: 210.4
1915 Female, age 42, unknown 220.9
2021 Male, age 53, unknown 214.2
2410 Female, age 72, unknown 209.6
1942 Male, age 51, unknown 207.2
2218 Male, age 76, both hemispheres 206.4
2223 Female, age 72, unknown 203.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 172.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 172.0
Samples: 139

Max nTPM: 385.8
Min nTPM: 53.5
Std nTPM: 67.5
Median nTPM: 162.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 385.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 336.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 321.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 312.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 307.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 304.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 295.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 294.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 287.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 281.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 280.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.0
FF:10158-103A5 76 years, female 72.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 146.3
Pig sample Sample description nTPM
Midbrain
nTPM: 104.4
Samples: 4

Max nTPM: 141.0
Min nTPM: 51.6
Sample A Female 51.6
Sample B Female 112.0
Sample C Male 112.9
Sample D Male 141.0
Periaqueductal gray
nTPM: 130.4
Samples: 3

Max nTPM: 174.6
Min nTPM: 100.5
Sample B Female 100.5
Sample C Male 174.6
Sample D Male 116.2
Substantia nigra
nTPM: 146.3
Samples: 4

Max nTPM: 222.4
Min nTPM: 44.2
Sample A Female 217.8
Sample B Female 100.9
Sample C Male 222.4
Sample D Male 44.2
Superior colliculi
nTPM: 95.7
Samples: 4

Max nTPM: 133.4
Min nTPM: 71.2
Sample A Female 133.4
Sample B Female 71.2
Sample C Male 79.1
Sample D Male 98.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 22.1
Min nTPM: 13.8
Sample A Male 22.1
Sample B Male 13.8
Sample C Female 14.0
Sample D Female 18.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68301682 Antisense, RP_041130_01_F06, Mouse strain C57BL/6J (56 days, male) 4.4
70194606 Antisense, RP_050517_01_G02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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