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MYCBP2
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:42.3 nTPM
HPA:42.3 nTPM
GTEx:41.6 nTPM
FANTOM5:131.1 Scaled Tags Per Million
Pig:26.6 nTPM
Mouse:49.7 nTPM
Allen mouse:14.7 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 42.3
Sample id Sample description nTPM
Amygdala
nTPM: 29.7
1987 Female, age 91, left hemisphere 32.3
2517 Female, age 94, left hemisphere 32.3
2814 Male, age 76, right hemisphere 30.7
2514 Male, age 75, right hemisphere 29.2
2695 Female, age 67, right hemisphere 23.9
Basal amygdala
nTPM: 32.9
2243 Female, age 91, right hemisphere 38.0
2110 Male, age 80, left hemisphere 37.7
2685 Female, age 94, left hemisphere 34.5
1955 Male, age 76, both hemispheres 33.2
2609 Male, age 75, right hemisphere 28.1
2827 Female, age 67, right hemisphere 26.0
Central amygdala
nTPM: 28.1
2239 Male, age 80, left hemisphere 36.3
2701 Female, age 91, right hemisphere 29.0
1905 Male, age 76, both hemispheres 28.6
2515 Male, age 75, right hemisphere 24.0
2826 Female, age 94, left hemisphere 22.4
Corticomedial amygdala
nTPM: 35.5
2829 Male, age 80, left hemisphere 42.9
2429 Female, age 94, left hemisphere 37.2
2242 Female, age 91, right hemisphere 36.2
2240 Male, age 76, both hemispheres 34.2
2535 Female, age 67, right hemisphere 32.7
2428 Male, age 75, right hemisphere 30.0
Lateral amygdala
nTPM: 29.1
1883 Male, age 76, both hemispheres 33.6
2534 Female, age 94, left hemisphere 30.3
2256 Male, age 80, left hemisphere 29.8
2255 Female, age 91, right hemisphere 28.7
2516 Male, age 75, right hemisphere 28.5
2830 Female, age 67, right hemisphere 23.5
Stria terminalis, bed nucleus
nTPM: 42.3
2486 Female, age 94, both hemispheres 48.3
1974 Female, age 91, both hemispheres 45.9
2201 Male, age 74, unknown 32.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 41.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 41.6
Samples: 152

Max nTPM: 98.1
Min nTPM: 18.8
Std nTPM: 13.9
Median nTPM: 39.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 98.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 82.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 79.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 78.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 77.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 71.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 70.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 69.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 67.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 66.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 65.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 64.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 64.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 64.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 63.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 60.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 59.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 58.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 57.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 57.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 57.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 56.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 54.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 53.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 53.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 53.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 53.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 52.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 52.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 52.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 52.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 52.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 51.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 50.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 50.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 50.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 50.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 49.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 48.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 47.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 47.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 47.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 47.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 47.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 46.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 46.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 45.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 45.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 45.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 45.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 44.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 44.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 44.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 43.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 43.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 42.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 42.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 42.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 42.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 42.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 41.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 41.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 41.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 41.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 41.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 41.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 40.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 40.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 40.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 40.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 39.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 39.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 39.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 39.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 39.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 39.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 39.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 38.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 38.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 38.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 38.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 38.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 37.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 37.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 37.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 37.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 36.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 35.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 35.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 35.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 35.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 35.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 35.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 35.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 35.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 34.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 34.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 34.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 34.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 34.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 34.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 33.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 33.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 33.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 33.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 33.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 32.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 32.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 32.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 31.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 31.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 31.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 31.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 31.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 31.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 30.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 30.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 30.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 30.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 30.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 30.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 29.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 29.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 29.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 29.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 29.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 29.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 29.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 28.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 28.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 28.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 28.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 28.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 28.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 28.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 27.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 27.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 27.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 26.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 26.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 25.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 25.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 25.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 25.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 24.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 24.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 24.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 23.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 22.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 21.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 20.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 18.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 131.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 131.1
FF:10151-102I7 76 years, female 131.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26.6
Pig sample Sample description nTPM
Amygdala
nTPM: 26.6
Samples: 4

Max nTPM: 31.1
Min nTPM: 21.8
Sample A Female 31.1
Sample B Female 21.8
Sample C Male 25.6
Sample D Male 27.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 49.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 49.7
Samples: 4

Max nTPM: 52.8
Min nTPM: 46.6
Sample A Male 52.5
Sample B Male 46.8
Sample C Female 46.6
Sample D Female 52.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 14.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.7
71234742 Antisense, RP_050505_04_D04, Mouse strain C57BL/6J (56 days, male) 14.7

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