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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:149.1 nTPM
HPA:144.0 nTPM
GTEx:149.1 nTPM
FANTOM5:210.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA029635Antibody HPA029637Antibody CAB033911
Glandular cells HighMediumMedium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 144.0
overview
Male, age 65
Small intestine sample 232
nTPM: 145.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 143.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 149.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 137.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 149.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 149.1
Samples: 187

Max nTPM: 268.1
Min nTPM: 83.8
Std nTPM: 29.2
Median nTPM: 145.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 268.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 253.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 241.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 213.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 211.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 209.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 202.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 202.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 198.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 195.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 194.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 194.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 193.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 188.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 188.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 187.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 185.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 184.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 184.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 183.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 182.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 181.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 180.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 180.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 179.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 179.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 178.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 178.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 177.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 176.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 176.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 176.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 175.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 175.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 174.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 174.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 173.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 173.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 172.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 172.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 170.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 169.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 168.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 168.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 167.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 167.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 167.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 167.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 166.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 166.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 166.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 165.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 165.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 165.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 164.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 163.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 162.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 162.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 161.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 160.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 160.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 160.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 160.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 159.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 158.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 158.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 158.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 158.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 157.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 156.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 155.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 154.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 154.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 153.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 153.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 153.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 152.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 151.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 149.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 149.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 148.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 148.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 148.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 148.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 147.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 147.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 146.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 146.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 146.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 146.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 146.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 146.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 145.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 145.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 145.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 145.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 145.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 145.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 145.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 143.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 143.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 142.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 142.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 141.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 140.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 140.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 140.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 140.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 139.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 139.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 139.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 139.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 138.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 138.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 138.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 138.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 137.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 137.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 137.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 137.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 137.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 137.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 136.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 136.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 136.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 136.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 136.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 136.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 135.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 135.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 135.3
GTEX-1192X-2526-SM-59868 50-59 years, male 134.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 134.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 134.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 133.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 133.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 132.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 132.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 131.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 130.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 130.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 129.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 128.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 128.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 127.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 127.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 126.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 125.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 125.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 124.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 123.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 123.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 122.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 122.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 122.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 122.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 121.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 120.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 120.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 119.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 119.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 118.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 118.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 117.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 117.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 116.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 115.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 115.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 115.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 113.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 113.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 112.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 112.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 111.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 111.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 110.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 109.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 109.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 107.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 105.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 104.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 103.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 95.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 93.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 90.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 83.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 83.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 210.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 210.3
FF:10024-101D6 15,40,85 years, mixed 210.3

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