We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PSMB1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PSMB1
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:137.6 nTPM
HPA:137.6 nTPM
GTEx:151.1 nTPM
FANTOM5:202.1 Scaled Tags Per Million
Pig:109.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 137.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 131.0
1981 Female, age 72, midline 145.3
2048 Male, age 55, midline 134.3
2816 Male, age 47, midline 126.3
2194 Female, age 79, both hemispheres 125.2
2565 Male, age 75, midline 124.0
Cervical spinal cord, dorsal horn
nTPM: 137.6
2173 Female, age 72, unknown 149.6
2296 Male, age 66, both hemispheres 149.5
2069 Male, age 47, both hemispheres 140.2
1877 Male, age 55, unknown 136.3
2297 Male, age 75, both hemispheres 127.4
2721 Male, age 90, both hemispheres 122.8
Cervical spinal cord, ventral horn
nTPM: 131.7
2098 Female, age 72, unknown 146.3
2480 Male, age 75, both hemispheres 134.4
2068 Male, age 55, unknown 133.3
2809 Male, age 90, both hemispheres 132.8
2295 Male, age 66, both hemispheres 124.8
2820 Female, age 79, both hemispheres 118.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 151.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 151.1
Samples: 159

Max nTPM: 281.2
Min nTPM: 75.3
Std nTPM: 35.1
Median nTPM: 144.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 281.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 257.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 255.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 243.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 238.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 229.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 221.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 216.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 211.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 211.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 210.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 209.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 207.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 203.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 202.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 200.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 199.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 196.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 194.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 190.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 189.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 186.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 186.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 184.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 182.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 181.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 181.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 181.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 181.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 181.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 179.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 176.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 176.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 175.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 174.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 173.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 173.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 173.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 172.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 171.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 171.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 170.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 169.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 169.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 169.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 169.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 168.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 168.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 167.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 164.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 163.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 162.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 162.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 161.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 160.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 159.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 158.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 157.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 155.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 155.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 155.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 154.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 154.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 153.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 153.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 151.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 150.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 149.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 149.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 148.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 148.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 148.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 148.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 147.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 147.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 146.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 146.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 145.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 144.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 144.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 143.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 142.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 141.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 141.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 141.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 141.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 140.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 139.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 139.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 139.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 139.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 137.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 137.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 137.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 136.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 136.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 135.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 135.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 134.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 134.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 134.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 133.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 133.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 132.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 132.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 132.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 132.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 131.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 131.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 130.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 130.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 129.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 129.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 128.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 128.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 127.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 127.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 127.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 126.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 126.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 126.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 125.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 125.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 125.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 124.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 124.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 123.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 123.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 122.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 122.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 122.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 121.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 120.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 119.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 119.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 118.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 117.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 117.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 115.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 114.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 114.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 114.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 113.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 111.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 109.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 109.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 108.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 108.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 108.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 106.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 105.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 101.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 101.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 100.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 100.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 99.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 98.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 94.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 75.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 202.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 202.1
FF:10181-103D1 60 years, female 252.5
FF:10159-103A6 76 years, female 151.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 109.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 95.6
Samples: 4

Max nTPM: 104.5
Min nTPM: 88.8
Sample A Female 98.0
Sample B Female 91.2
Sample C Male 104.5
Sample D Male 88.8
Ventral spinal cord
nTPM: 109.6
Samples: 4

Max nTPM: 117.8
Min nTPM: 101.0
Sample A Female 103.3
Sample B Female 117.8
Sample C Male 116.4
Sample D Male 101.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.