BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.2 nTPM
HPA:27.2 nTPM
GTEx:45.5 nTPM
FANTOM5:139.6 Scaled Tags Per Million
Pig:34.0 nTPM
Mouse:27.0 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.3
1857 Female, age 85, left hemisphere 25.7
2846 Female, age 79, unknown 22.8
2290 Female, age 72, unknown 21.2
1781 Male, age 74, unknown 20.7
1854 Male, age 80, left hemisphere 20.6
2289 Male, age 61, right hemisphere 17.0
2288 Male, age 75, left hemisphere 15.0
2481 Female, age 94, left hemisphere 11.1
Claustrum
nTPM: 15.5
2198 Male, age 80, both hemispheres 22.8
2284 Female, age 91, both hemispheres 21.6
2568 Male, age 61, both hemispheres 17.9
2645 Female, age 72, unknown 15.2
2196 Female, age 79, unknown 14.8
2392 Female, age 94, both hemispheres 14.2
2491 Male, age 75, both hemispheres 14.1
1956 Male, age 74, unknown 12.7
2292 Female, age 85, both hemispheres 6.3
Globus pallidus, externus
nTPM: 1.7
2646 Male, age 61, right hemisphere 3.6
2395 Male, age 75, both hemispheres 3.0
2772 Female, age 79, unknown 0.9
2567 Female, age 72, unknown 0.8
1996 Male, age 80, right hemisphere 0.2
Globus pallidus, internus
nTPM: 1.7
2483 Female, age 94, right hemisphere 6.5
1818 Male, age 74, unknown 2.0
2566 Female, age 72, unknown 1.5
2287 Male, age 75, right hemisphere 1.1
2037 Male, age 80, right hemisphere 0.5
2778 Female, age 91, both hemispheres 0.3
2111 Female, age 85, right hemisphere 0.1
Nucleus accumbens
nTPM: 23.0
1856 Female, age 91, right hemisphere 52.2
1783 Male, age 74, unknown 27.3
1806 Female, age 85, left hemisphere 24.8
2824 Male, age 61, right hemisphere 24.4
2698 Female, age 72, unknown 19.7
2286 Male, age 75, left hemisphere 15.0
2732 Male, age 80, right hemisphere 12.1
2391 Female, age 94, left hemisphere 8.6
Nucleus basalis of Meynert
nTPM: 13.9
2393 Male, age 80, right hemisphere 20.3
2484 Female, age 94, left hemisphere 19.1
2821 Male, age 75, both hemispheres 11.2
2569 Male, age 61, both hemispheres 5.2
Nucleus of the diagonal band
nTPM: 25.0
2775 Male, age 80, right hemisphere 30.9
2195 Female, age 85, both hemispheres 29.2
1812 Female, age 91, both hemispheres 28.0
2029 Male, age 61, right hemisphere 22.6
1979 Male, age 74, unknown 14.3
Olfactory tubercle
nTPM: 27.2
1998 Female, age 91, both hemispheres 31.4
2487 Female, age 94, left hemisphere 29.0
2856 Male, age 75, right hemisphere 24.6
1846 Male, age 80, right hemisphere 23.6
Putamen
nTPM: 21.3
1937 Female, age 91, right hemisphere 39.1
1838 Male, age 80, right hemisphere 29.7
2466 Female, age 79, unknown 21.0
1829 Male, age 74, unknown 19.7
2489 Female, age 72, unknown 14.0
2647 Male, age 75, left hemisphere 13.7
2482 Female, age 94, left hemisphere 12.3
Septal nuclei
nTPM: 21.8
1960 Male, age 74, unknown 33.0
2629 Female, age 94, right hemisphere 29.2
2031 Female, age 72, unknown 26.8
2009 Female, age 91, both hemispheres 24.3
2059 Female, age 85, both hemispheres 21.6
2394 Male, age 61, left hemisphere 13.1
2199 Male, age 80, right hemisphere 4.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.3
Samples: 246

Max nTPM: 77.9
Min nTPM: 0.8
Std nTPM: 16.5
Median nTPM: 28.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 77.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 77.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 72.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 67.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 65.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 63.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 60.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 59.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 58.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 58.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 57.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.5
Samples: 246

Max nTPM: 126.2
Min nTPM: 1.0
Std nTPM: 24.6
Median nTPM: 46.0
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 126.2
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 114.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 109.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 101.2
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 99.5
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 97.7
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 96.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 96.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 93.6
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 91.8
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 90.3
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Brain - Putamen (basal ganglia)
Average nTPM: 28.5
Samples: 205

Max nTPM: 80.1
Min nTPM: 1.2
Std nTPM: 17.9
Median nTPM: 26.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 80.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 76.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 75.4
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 71.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 69.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 66.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 64.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 63.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 61.8
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 61.1
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 60.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 79.5
FF:10164-103B2 76 years, female 79.5
Globus pallidus
Scaled Tags Per Million: 19.9
FF:10175-103C4 60 years, female 33.1
FF:10161-103A8 76 years, female 6.6
Nucleus accumbens
Scaled Tags Per Million: 89.1
FF:10037-101F1 23-56 years, mixed 89.1
Putamen
Scaled Tags Per Million: 139.6
FF:10176-103C5 60 years, female 139.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 34.0
Pig sample Sample description nTPM
Caudate
nTPM: 34.0
Samples: 4

Max nTPM: 46.3
Min nTPM: 28.2
Sample A Female 28.2
Sample B Female 46.3
Sample C Male 32.6
Sample D Male 28.9
Putamen
nTPM: 22.2
Samples: 4

Max nTPM: 24.4
Min nTPM: 18.0
Sample A Female 22.5
Sample B Female 23.9
Sample C Male 18.0
Sample D Male 24.4
Septum
nTPM: 27.2
Samples: 4

Max nTPM: 33.8
Min nTPM: 21.3
Sample A Female 33.8
Sample B Female 27.5
Sample C Male 21.3
Sample D Male 26.2
Ventral pallidum
nTPM: 28.6
Samples: 4

Max nTPM: 35.4
Min nTPM: 22.4
Sample A Female 32.6
Sample B Female 24.0
Sample C Male 22.4
Sample D Male 35.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 27.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.0
Samples: 4

Max nTPM: 34.1
Min nTPM: 21.3
Sample A Male 21.3
Sample B Male 24.5
Sample C Female 28.1
Sample D Female 34.1
Septum
nTPM: 25.1
Samples: 4

Max nTPM: 29.0
Min nTPM: 20.9
Sample A Male 29.0
Sample B Male 20.9
Sample C Female 23.0
Sample D Female 27.4
Ventral forebrain
nTPM: 23.5
Samples: 4

Max nTPM: 27.1
Min nTPM: 19.2
Sample A Male 19.2
Sample B Male 23.1
Sample C Female 27.1
Sample D Female 24.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
70743868 Antisense, RP_050725_01_G08, Mouse strain C57BL/6J (56 days, male) 1.2
643550 Antisense, RP_040914_01_G09, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.3
70743868 Antisense, RP_050725_01_G08, Mouse strain C57BL/6J (56 days, male) 0.7
643550 Antisense, RP_040914_01_G09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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