MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.0 nTPM
HPA:56.0 nTPM
GTEx:54.9 nTPM
FANTOM5:372.4 Scaled Tags Per Million
Pig:79.2 nTPM
Mouse:157.3 nTPM
Allen mouse:17.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.9
2411 Female, age 72, unknown 57.8
2019 Male, age 18, unknown 57.7
1870 Female, age 42, unknown 57.3
1827 Male, age 72, unknown 54.0
2586 Male, age 75, left hemisphere 53.6
2828 Female, age 72, unknown 52.4
1830 Male, age 51, unknown 51.7
1833 Male, age 53, unknown 49.9
2666 Male, age 74, left hemisphere 49.5
2219 Male, age 76, both hemispheres 45.4
Dorsal raphe nucleus
nTPM: 47.9
2750 Male, age 76, both hemispheres 53.3
2016 Female, age 72, unknown 49.1
1828 Male, age 53, unknown 48.9
2298 Female, age 72, unknown 44.5
2047 Male, age 72, unknown 43.5
Inferior colliculus
nTPM: 48.0
1890 Male, age 53, unknown 50.4
2097 Female, age 72, unknown 48.9
1848 Female, age 42, unknown 47.9
2849 Male, age 72, unknown 44.7
Median raphe nucleus
nTPM: 47.0
2220 Male, age 76, midline 47.0
Pedunculopontine tegmental nucleus
nTPM: 47.6
2334 Male, age 80, both hemispheres 52.4
1921 Female, age 85, both hemispheres 48.7
2338 Male, age 61, both hemispheres 41.7
Periaquaductal grey, anterior
nTPM: 50.5
2502 Female, age 75, unknown 55.5
1947 Male, age 18, unknown 50.1
1795 Male, age 51, unknown 45.8
Periaquaductal grey, dorsal
nTPM: 46.3
1831 Male, age 72, unknown 50.3
2464 Female, age 72, unknown 49.2
2850 Male, age 76, both hemispheres 44.6
1840 Male, age 53, unknown 40.9
Periaquaductal grey, lateral
nTPM: 44.5
2053 Male, age 18, unknown 49.4
2140 Male, age 76, both hemispheres 42.1
2272 Male, age 74, both hemispheres 42.0
Pretectal area
nTPM: 53.2
1816 Male, age 51, unknown 61.1
1815 Male, age 53, unknown 58.6
1944 Female, age 72, unknown 57.9
2007 Male, age 72, unknown 57.2
2273 Male, age 74, both hemispheres 55.2
1817 Female, age 42, unknown 55.1
2316 Male, age 76, right hemisphere 49.2
2407 Male, age 75, both hemispheres 49.1
2825 Male, age 18, unknown 48.2
2667 Female, age 75, unknown 47.8
2224 Female, age 72, unknown 46.1
Red nucleus
nTPM: 56.0
1865 Male, age 51, unknown 65.3
1821 Female, age 72, unknown 64.0
1904 Male, age 53, unknown 61.2
2503 Female, age 72, unknown 60.9
2785 Male, age 18, unknown 59.3
1954 Female, age 42, unknown 55.6
2588 Male, age 74, left hemisphere 54.9
2769 Male, age 72, unknown 54.2
2227 Male, age 72, unknown 54.0
2823 Male, age 76, right hemisphere 50.9
2725 Female, age 75, unknown 47.7
2584 Male, age 75, left hemisphere 44.3
Substantia nigra
nTPM: 48.2
1889 Female, age 72, unknown 55.9
2409 Female, age 72, unknown 53.4
2583 Male, age 75, right hemisphere 51.4
2590 Female, age 75, unknown 51.2
1941 Male, age 53, unknown 48.8
1851 Male, age 51, unknown 47.0
2241 Male, age 72, unknown 46.2
2665 Male, age 74, both hemispheres 44.7
2699 Male, age 18, unknown 41.9
1916 Female, age 42, unknown 41.4
Superior colliculus
nTPM: 54.9
1913 Female, age 42, unknown 64.8
2668 Female, age 75, unknown 60.2
1995 Male, age 72, unknown 58.7
2587 Male, age 74, left hemisphere 56.2
2261 Male, age 18, unknown 53.4
1895 Male, age 76, right hemisphere 52.8
2664 Male, age 75, both hemispheres 52.6
2087 Female, age 72, unknown 52.3
1796 Male, age 53, unknown 50.9
1839 Male, age 51, unknown 47.3
Ventral tegmental area
nTPM: 46.7
2410 Female, age 72, unknown 51.5
2223 Female, age 72, unknown 50.3
1942 Male, age 51, unknown 45.6
2021 Male, age 53, unknown 44.8
2218 Male, age 76, both hemispheres 44.6
1915 Female, age 42, unknown 43.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.9
Samples: 139

Max nTPM: 116.2
Min nTPM: 24.3
Std nTPM: 17.5
Median nTPM: 51.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 116.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 106.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 101.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 99.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 99.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 94.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 93.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 92.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 87.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 86.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 86.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 372.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 372.4
FF:10158-103A5 76 years, female 372.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.2
Pig sample Sample description nTPM
Midbrain
nTPM: 79.2
Samples: 4

Max nTPM: 84.5
Min nTPM: 76.1
Sample A Female 84.5
Sample B Female 76.1
Sample C Male 79.9
Sample D Male 76.4
Periaqueductal gray
nTPM: 66.6
Samples: 3

Max nTPM: 70.9
Min nTPM: 64.4
Sample B Female 70.9
Sample C Male 64.4
Sample D Male 64.4
Substantia nigra
nTPM: 66.3
Samples: 4

Max nTPM: 70.7
Min nTPM: 59.1
Sample A Female 70.0
Sample B Female 59.1
Sample C Male 65.5
Sample D Male 70.7
Superior colliculi
nTPM: 69.4
Samples: 4

Max nTPM: 76.4
Min nTPM: 50.1
Sample A Female 75.2
Sample B Female 50.1
Sample C Male 76.4
Sample D Male 76.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 157.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 157.3
Samples: 4

Max nTPM: 162.8
Min nTPM: 143.8
Sample A Male 143.8
Sample B Male 162.7
Sample C Female 162.8
Sample D Female 159.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.8
70302246 Antisense, RP_050607_03_H09, Mouse strain C57BL/6J (56 days, male) 17.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.