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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:139.2 nTPM
HPA:139.2 nTPM
GTEx:179.7 nTPM
FANTOM5:300.3 Scaled Tags Per Million
Pig:37.2 nTPM
Mouse:18.5 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 139.2
Sample id Sample description nTPM
Amygdala
nTPM: 136.2
1987 Female, age 91, left hemisphere 147.6
2514 Male, age 75, right hemisphere 140.2
2517 Female, age 94, left hemisphere 134.1
2814 Male, age 76, right hemisphere 132.9
2695 Female, age 67, right hemisphere 126.0
Basal amygdala
nTPM: 131.2
2243 Female, age 91, right hemisphere 143.3
1955 Male, age 76, both hemispheres 141.8
2609 Male, age 75, right hemisphere 136.5
2110 Male, age 80, left hemisphere 130.8
2685 Female, age 94, left hemisphere 124.4
2827 Female, age 67, right hemisphere 110.6
Central amygdala
nTPM: 139.2
2239 Male, age 80, left hemisphere 148.4
2701 Female, age 91, right hemisphere 147.0
2515 Male, age 75, right hemisphere 146.8
1905 Male, age 76, both hemispheres 138.0
2826 Female, age 94, left hemisphere 115.7
Corticomedial amygdala
nTPM: 138.4
2242 Female, age 91, right hemisphere 152.4
2240 Male, age 76, both hemispheres 146.3
2428 Male, age 75, right hemisphere 141.2
2429 Female, age 94, left hemisphere 137.1
2829 Male, age 80, left hemisphere 136.5
2535 Female, age 67, right hemisphere 116.7
Lateral amygdala
nTPM: 127.3
2256 Male, age 80, left hemisphere 139.6
2255 Female, age 91, right hemisphere 136.1
2516 Male, age 75, right hemisphere 132.0
1883 Male, age 76, both hemispheres 128.7
2534 Female, age 94, left hemisphere 122.2
2830 Female, age 67, right hemisphere 105.6
Stria terminalis, bed nucleus
nTPM: 127.8
2486 Female, age 94, both hemispheres 130.7
2201 Male, age 74, unknown 130.0
1974 Female, age 91, both hemispheres 122.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 179.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 179.7
Samples: 152

Max nTPM: 589.8
Min nTPM: 25.3
Std nTPM: 94.8
Median nTPM: 156.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 589.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 476.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 420.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 412.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 395.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 370.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 353.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 345.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 344.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 343.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 341.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 340.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 337.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 335.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 331.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 329.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 315.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 304.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 298.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 289.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 289.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 283.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 279.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 278.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 265.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 257.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 252.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 252.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 248.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 246.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 245.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 243.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 243.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 240.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 239.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 236.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 234.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 234.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 233.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 229.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 225.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 218.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 213.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 210.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 209.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 207.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 206.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 205.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 200.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 198.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 198.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 198.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 197.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 194.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 191.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 191.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 188.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 188.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 185.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 184.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 184.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 184.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 179.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 177.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 175.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 173.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 171.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 170.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 169.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 169.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 167.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 163.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 161.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 160.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 157.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 157.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 156.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 155.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 155.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 155.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 155.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 155.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 154.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 154.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 153.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 152.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 152.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 148.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 147.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 146.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 144.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 143.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 140.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 139.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 139.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 137.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 135.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 134.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 134.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 132.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 131.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 129.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 129.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 128.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 126.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 125.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 124.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 123.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 123.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 121.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 120.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 117.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 116.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 110.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 110.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 110.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 109.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 104.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 103.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 103.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 102.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 100.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 99.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 99.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 98.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 97.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 97.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 93.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 92.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 92.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 91.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 89.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 84.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 84.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 83.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 83.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 76.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 73.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 70.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 69.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 68.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 66.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 63.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 61.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 59.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 55.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 49.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 45.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 39.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 34.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 30.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 25.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 300.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 300.3
FF:10151-102I7 76 years, female 300.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.2
Pig sample Sample description nTPM
Amygdala
nTPM: 37.2
Samples: 4

Max nTPM: 46.0
Min nTPM: 25.2
Sample A Female 37.4
Sample B Female 46.0
Sample C Male 40.3
Sample D Male 25.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 18.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 18.5
Samples: 4

Max nTPM: 20.4
Min nTPM: 17.3
Sample A Male 18.6
Sample B Male 17.8
Sample C Female 20.4
Sample D Female 17.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
68269646 Antisense, RP_041129_02_A02, Mouse strain C57BL/6J (56 days, male) 0.0

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