MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:155.7 nTPM
HPA:155.7 nTPM
GTEx:243.0 nTPM
FANTOM5:172.4 Scaled Tags Per Million
Pig:43.1 nTPM
Mouse:42.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 155.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 130.1
1833 Male, age 53, unknown 141.4
2586 Male, age 75, left hemisphere 139.0
1870 Female, age 42, unknown 136.0
2828 Female, age 72, unknown 132.6
1830 Male, age 51, unknown 131.8
2411 Female, age 72, unknown 130.5
1827 Male, age 72, unknown 127.2
2666 Male, age 74, left hemisphere 126.0
2219 Male, age 76, both hemispheres 122.1
2019 Male, age 18, unknown 114.0
Dorsal raphe nucleus
nTPM: 154.1
2047 Male, age 72, unknown 164.2
1828 Male, age 53, unknown 157.8
2016 Female, age 72, unknown 157.5
2298 Female, age 72, unknown 155.3
2750 Male, age 76, both hemispheres 135.8
Inferior colliculus
nTPM: 147.9
1848 Female, age 42, unknown 155.8
2849 Male, age 72, unknown 148.1
1890 Male, age 53, unknown 145.1
2097 Female, age 72, unknown 142.8
Median raphe nucleus
nTPM: 151.7
2220 Male, age 76, midline 151.7
Pedunculopontine tegmental nucleus
nTPM: 154.9
2338 Male, age 61, both hemispheres 184.2
2334 Male, age 80, both hemispheres 144.1
1921 Female, age 85, both hemispheres 136.5
Periaquaductal grey, anterior
nTPM: 140.1
1947 Male, age 18, unknown 148.6
1795 Male, age 51, unknown 142.1
2502 Female, age 75, unknown 129.4
Periaquaductal grey, dorsal
nTPM: 155.7
2850 Male, age 76, both hemispheres 176.2
1840 Male, age 53, unknown 157.5
2464 Female, age 72, unknown 146.8
1831 Male, age 72, unknown 142.2
Periaquaductal grey, lateral
nTPM: 152.3
2272 Male, age 74, both hemispheres 158.3
2140 Male, age 76, both hemispheres 155.6
2053 Male, age 18, unknown 143.1
Pretectal area
nTPM: 139.8
2224 Female, age 72, unknown 155.6
2273 Male, age 74, both hemispheres 152.9
2825 Male, age 18, unknown 150.3
2667 Female, age 75, unknown 149.2
1817 Female, age 42, unknown 145.1
1944 Female, age 72, unknown 139.5
2316 Male, age 76, right hemisphere 134.3
2407 Male, age 75, both hemispheres 132.9
1815 Male, age 53, unknown 130.0
1816 Male, age 51, unknown 129.1
2007 Male, age 72, unknown 119.5
Red nucleus
nTPM: 138.8
1821 Female, age 72, unknown 151.1
1954 Female, age 42, unknown 150.8
2725 Female, age 75, unknown 148.9
2503 Female, age 72, unknown 145.0
1865 Male, age 51, unknown 141.9
1904 Male, age 53, unknown 141.5
2227 Male, age 72, unknown 141.5
2823 Male, age 76, right hemisphere 138.2
2769 Male, age 72, unknown 138.1
2584 Male, age 75, left hemisphere 126.6
2785 Male, age 18, unknown 121.2
2588 Male, age 74, left hemisphere 120.8
Substantia nigra
nTPM: 149.8
2699 Male, age 18, unknown 198.3
2241 Male, age 72, unknown 165.9
1916 Female, age 42, unknown 157.8
1851 Male, age 51, unknown 151.6
2409 Female, age 72, unknown 149.4
1889 Female, age 72, unknown 147.0
2590 Female, age 75, unknown 138.7
1941 Male, age 53, unknown 132.6
2583 Male, age 75, right hemisphere 129.3
2665 Male, age 74, both hemispheres 127.6
Superior colliculus
nTPM: 135.0
1995 Male, age 72, unknown 146.3
2087 Female, age 72, unknown 142.0
2261 Male, age 18, unknown 140.9
1796 Male, age 53, unknown 137.8
1913 Female, age 42, unknown 132.9
2668 Female, age 75, unknown 132.7
2587 Male, age 74, left hemisphere 131.0
1839 Male, age 51, unknown 130.9
2664 Male, age 75, both hemispheres 130.9
1895 Male, age 76, right hemisphere 125.1
Ventral tegmental area
nTPM: 144.0
1915 Female, age 42, unknown 153.4
2218 Male, age 76, both hemispheres 145.1
1942 Male, age 51, unknown 143.9
2410 Female, age 72, unknown 142.2
2021 Male, age 53, unknown 142.0
2223 Female, age 72, unknown 137.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 243.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 243.0
Samples: 139

Max nTPM: 1084.0
Min nTPM: 11.7
Std nTPM: 180.7
Median nTPM: 190.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1084.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 818.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 800.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 777.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 739.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 714.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 681.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 632.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 598.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 596.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 571.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.4
FF:10158-103A5 76 years, female 172.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.1
Pig sample Sample description nTPM
Midbrain
nTPM: 36.0
Samples: 4

Max nTPM: 45.7
Min nTPM: 27.5
Sample A Female 38.2
Sample B Female 45.7
Sample C Male 32.4
Sample D Male 27.5
Periaqueductal gray
nTPM: 43.1
Samples: 3

Max nTPM: 45.5
Min nTPM: 39.9
Sample B Female 45.5
Sample C Male 43.9
Sample D Male 39.9
Substantia nigra
nTPM: 35.2
Samples: 4

Max nTPM: 41.9
Min nTPM: 31.1
Sample A Female 41.9
Sample B Female 35.2
Sample C Male 32.5
Sample D Male 31.1
Superior colliculi
nTPM: 34.8
Samples: 4

Max nTPM: 39.3
Min nTPM: 31.2
Sample A Female 39.3
Sample B Female 31.2
Sample C Male 35.6
Sample D Male 33.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.9
Samples: 4

Max nTPM: 46.0
Min nTPM: 41.1
Sample A Male 46.0
Sample B Male 43.1
Sample C Female 41.5
Sample D Female 41.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68269646 Antisense, RP_041129_02_A02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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