MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1323.4 nTPM
HPA:1323.4 nTPM
GTEx:1346.4 nTPM
FANTOM5:415.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1323.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1286.0
2666 Male, age 74, left hemisphere 1310.7
1870 Female, age 42, unknown 1308.3
2828 Female, age 72, unknown 1308.2
2411 Female, age 72, unknown 1298.2
2586 Male, age 75, left hemisphere 1290.4
1833 Male, age 53, unknown 1284.1
1830 Male, age 51, unknown 1283.7
2019 Male, age 18, unknown 1269.7
1827 Male, age 72, unknown 1265.0
2219 Male, age 76, both hemispheres 1241.5
Dorsal raphe nucleus
nTPM: 1289.7
2016 Female, age 72, unknown 1307.9
2298 Female, age 72, unknown 1296.5
2750 Male, age 76, both hemispheres 1290.1
1828 Male, age 53, unknown 1283.2
2047 Male, age 72, unknown 1270.8
Inferior colliculus
nTPM: 1267.5
1890 Male, age 53, unknown 1290.8
2097 Female, age 72, unknown 1264.6
1848 Female, age 42, unknown 1263.1
2849 Male, age 72, unknown 1251.3
Median raphe nucleus
nTPM: 1271.5
2220 Male, age 76, midline 1271.5
Pedunculopontine tegmental nucleus
nTPM: 1297.1
2338 Male, age 61, both hemispheres 1333.3
2334 Male, age 80, both hemispheres 1306.7
1921 Female, age 85, both hemispheres 1251.3
Periaquaductal grey, anterior
nTPM: 1278.0
2502 Female, age 75, unknown 1300.1
1795 Male, age 51, unknown 1273.6
1947 Male, age 18, unknown 1260.2
Periaquaductal grey, dorsal
nTPM: 1279.7
1840 Male, age 53, unknown 1293.3
1831 Male, age 72, unknown 1287.8
2464 Female, age 72, unknown 1271.0
2850 Male, age 76, both hemispheres 1266.8
Periaquaductal grey, lateral
nTPM: 1270.7
2053 Male, age 18, unknown 1288.7
2140 Male, age 76, both hemispheres 1267.3
2272 Male, age 74, both hemispheres 1256.1
Pretectal area
nTPM: 1266.2
2316 Male, age 76, right hemisphere 1290.0
1815 Male, age 53, unknown 1278.8
1817 Female, age 42, unknown 1277.5
2825 Male, age 18, unknown 1273.4
2273 Male, age 74, both hemispheres 1272.2
2224 Female, age 72, unknown 1269.4
2407 Male, age 75, both hemispheres 1265.6
2007 Male, age 72, unknown 1263.9
1816 Male, age 51, unknown 1251.7
1944 Female, age 72, unknown 1247.1
2667 Female, age 75, unknown 1238.6
Red nucleus
nTPM: 1305.1
2503 Female, age 72, unknown 1362.9
1865 Male, age 51, unknown 1323.6
2769 Male, age 72, unknown 1319.4
1821 Female, age 72, unknown 1315.7
2227 Male, age 72, unknown 1311.8
1904 Male, age 53, unknown 1307.7
2588 Male, age 74, left hemisphere 1306.0
2725 Female, age 75, unknown 1302.1
2584 Male, age 75, left hemisphere 1287.3
2785 Male, age 18, unknown 1284.4
1954 Female, age 42, unknown 1277.3
2823 Male, age 76, right hemisphere 1262.9
Substantia nigra
nTPM: 1323.4
2699 Male, age 18, unknown 1383.2
1851 Male, age 51, unknown 1374.6
2409 Female, age 72, unknown 1350.2
2665 Male, age 74, both hemispheres 1338.0
1916 Female, age 42, unknown 1325.7
2241 Male, age 72, unknown 1319.9
2590 Female, age 75, unknown 1317.0
1889 Female, age 72, unknown 1283.5
2583 Male, age 75, right hemisphere 1278.4
1941 Male, age 53, unknown 1263.9
Superior colliculus
nTPM: 1288.6
2587 Male, age 74, left hemisphere 1340.1
1995 Male, age 72, unknown 1319.9
1913 Female, age 42, unknown 1318.6
2668 Female, age 75, unknown 1301.6
1796 Male, age 53, unknown 1292.6
1839 Male, age 51, unknown 1268.3
2261 Male, age 18, unknown 1265.7
1895 Male, age 76, right hemisphere 1262.2
2664 Male, age 75, both hemispheres 1261.2
2087 Female, age 72, unknown 1255.6
Ventral tegmental area
nTPM: 1314.4
1915 Female, age 42, unknown 1352.4
2410 Female, age 72, unknown 1327.9
2223 Female, age 72, unknown 1321.6
2021 Male, age 53, unknown 1312.2
1942 Male, age 51, unknown 1292.8
2218 Male, age 76, both hemispheres 1279.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1346.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1346.4
Samples: 139

Max nTPM: 4943.3
Min nTPM: 407.8
Std nTPM: 593.4
Median nTPM: 1218.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4943.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3592.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3398.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2521.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2494.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2412.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2359.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2321.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2225.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2172.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 2103.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 415.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 415.0
FF:10158-103A5 76 years, female 415.0

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